Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3 185 1e-41 >seq3 Length=2731838 Score = 185 bits (204), Expect = 1e-41 Identities = 475/718 (66%), Gaps = 18/718 (3%) Strand=Plus/Minus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||| | ||||| || |||||||||||||| | || ||||| |||||||| || Sbjct 1814876 AAATGGAGCAAGATGGCTTTTAACACCAATAGGACCCATTCCTGGACCACCACCTCCGTG 1814817 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGG 138280 ||||||||||||||||||||| | ||| | ||| |||| || ||||||||| | ||| Sbjct 1814816 TGGAATACAGAATGTCTTATGAAGATTCAAATGTGATACGTCACTACCATAGTCTCCTGG 1814757 Query 138281 TTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATT 138340 | | || || ||||||||||| | ||| || ||||| ||||| || || || ||||| Sbjct 1814756 TCTACATAATCCAACCTGTGCATTAAAATTAGCTCCATCAAGATAAACTTGTCCTCCATT 1814697 Query 138341 GTCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGG 138400 || ||||| | ||||| | | | || || ||||||| |||||||| || ||||| Sbjct 1814696 TTCGTGAACTTTATTACAAACATCAATAATATTACTTTCAAAAACACCATGTGTAGATGG 1814637 Query 138401 ATATGTAATCATAATA----CATGAGAGTT--CAAATGTATTCATGATTGCTTTCTTCTC 138454 ||| || | ||| ||| || || | | || || | ||| || ||| Sbjct 1814636 ATAAGTTACCATTATAGCACCAAGATCGCTACCATAT-TTTTC-----CGCCTTCAAAGA 1814583 Query 138455 TAGATCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCC 138514 ||||||||| | ||||| || | | |||| | | ||| || ||||| | Sbjct 1814582 AAGATCTTTGTAATTAATGTTACCGTGTTTATCAGAATCAACAGGAACGACTTTAAAGTT 1814523 Query 138515 TGCCATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATT 138574 ||||| |||| |||||||| |||||||| ||||| ||| || ||||| | || Sbjct 1814522 AGCCATTGATGCAGAGGCAGGATTTGTTCCATGAGCTGATGTTGGAATAAGACAAATTTT 1814463 Query 138575 TCTTTTATCATCTCC---TGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATA 138631 ||| || || | ||| ||| || | | | ||| ||| ||||| | || || || Sbjct 1814462 TCTATTCTCTTGTCCAATAGAT--TTAAGGTAACTCTT-GATGGCTAATAAACCAGCGTA 1814406 Query 138632 CTCACCCTGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACA 138691 ||||| | | ||| || ||||| | || | | ||| |||| || | ||||| Sbjct 1814405 TTCACCATTAGCTCCACTATTTGGTTGGAGAGAAAAATTGTCATAACCAGTAACTTCACA 1814346 Query 138692 TAACCATTTCTGTAAGTCATCTATTATCTTTTGATAACCCATGGTCTGTATCATAGGTGT 138751 | |||||| | | ||| | || ||||||||||| | | || || ||| Sbjct 1814345 AAGCCATTTTTCAAGATCAATGAAAATTTTTTGATAACCTTTAGCTTGCTCAATCGGTAC 1814286 Query 138752 ATGTGGATGCACGTTGGCAAATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATT 138811 | |||||| | || | ||| | ||| | | || | || |||||||| ||||| Sbjct 1814285 AAATGGATGTATATTTGATAATGATGGCCACGTTAGTGGTAACATCTCTGCTGCGGCATT 1814226 Query 138812 TAGTTTCATTGTGCAACTACCAAGTGGAACCATACCATTTACTAATGAGAAATCTTTA 138869 | |||||| || || || | |||| |||| || || | ||| || |||||| Sbjct 1814225 CAATTTCATAGTACACGATCCTAAGGGAATCATAGAATGAACAAGTGACAAGTCTTTA 1814168 Score = 102 bits (112), Expect = 9e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 139238 AATTCTTCTTGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGA 139297 |||| |||||||||| || |||| | || | |||||||| ||||||| | | ||| Sbjct 1813772 AATTTTTCTTGCTATTGCCTGTAAACGATTAGGTCCATGATAAACTGCATACATTGCAGC 1813713 Query 139298 CATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAAT 139357 | ||||| | | |||||||||||| ||||| || || ||||| || | |||||| Sbjct 1813712 AAGGTTTGCTGGTAATGCTTGTGCTGTACAGATATTTGATGTAGCTTTATCACGTCTAAT 1813653 Query 139358 ATGCTGCTCTCTAGTTTGTAGTGCTAATC 139386 |||||| ||||| ||||| || ||||||| Sbjct 1813652 ATGCTGTTCTCTTGTTTGAAGAGCTAATC 1813624 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 139846 TATATGCTAACAGCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTG 139905 || ||||||| ||| || |||| ||||| ||||| || | || ||| ||||||| Sbjct 1813161 TACATGCTAAGGCCATAGCTTCTGAACAAGCAGTAGCTTCGTCCAGTAAAGAAGCGTTTG 1813102 Query 139906 CTATTGGTAATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATC 139965 ||||| | || || | || ||||| | |||||| |||| | |||| |||| | || Sbjct 1813101 CTATTTCAAGGCCAGTTAAATCAGTGATCATAGTTTGGAAATTTAGTAAACCTTCAAGTC 1813042 Query 139966 TTCCCTGAGATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAA 140025 ||||||| |||| || | |||||| || || || | || ||||| || ||| | || Sbjct 1813041 TTCCCTGTGATAGTTCCGGTTGATACGGGGTATATGGCGTTGTCCAACCAGCATTTTGAA 1812982 Query 140026 GAACGTTTC 140034 | | |||| Sbjct 1812981 GCATATTTC 1812973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578994151599240