Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1 293 3e-74 >seq1 Length=5851329 Score = 293 bits (324), Expect = 3e-74 Identities = 526/769 (68%), Gaps = 37/769 (5%) Strand=Plus/Plus Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844 || ||||| ||||||||||| ||||| ||||| || |||||||| ||| ||||||||| Sbjct 4802007 TTACCTGTAGCAATAACAAAGTCATCTGGTTCATCATGTTGAAGGATTCTCCACATAGCT 4802066 Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAA 47904 || ||||| || | ||||| ||||| ||||| ||||| | ||| || || |||| Sbjct 4802067 TCAACATACTCCTTCGCATGACCCCAATCACGTTTGGCATCCAAATTACCAAGTAATAAT 4802126 Query 47905 CAGTCTTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAA 47964 ||||| |||| | |||| || || |||||||| || | ||||||||| Sbjct 4802127 GTTTCTTGAACACCTATACTGATTTTAGCTACAGCCCTTGTAATTTTTCTTGTTACAAAA 4802186 Query 47965 GTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCG 48024 | | ||| | |||||| ||||||||||| || | ||||||| | || ||| | ||||| Sbjct 4802187 TTATTACCTCTTCTTGGTGATTCATGATTGAATAAAATACCATTGCAAGCAAATATTCCA 4802246 Query 48025 TATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGA 48084 |||| ||||||||| || |||| |||||| || | || | |||||| || |||| ||| Sbjct 4802247 TATGCTTCACGATAATTTTTTATTATCCAATAAGCGTACAATTTTGCTACTGCATATGGA 4802306 Query 48085 GAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGT 48144 ||||||||||| ||||| |||||| | || || | ||||| || || ||||||||| Sbjct 4802307 CTTCGTGGATAGAATGGTGTTGTCTCTTTTTGAGGGATTTCTTGAACTTTTCCATAAAGT 4802366 Query 48145 TCACTGGTGGATGCTTGATAGATACGAACCCTATCTT--CCATCTCAAGCAAACGGACTG 48202 || ||| || |||||||| | | || ||| || || || || | | | Sbjct 4802367 TCTGAGGTAGAAGCTTGATAAAATCTGACTTTATGTTGAAGATTGCATGCTA--CTATAG 4802424 Query 48203 CCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAA 48262 | ||||| | ||| | || |||| ||||| || | ||||| || || | |||| Sbjct 4802425 CATCAAGAAGTCTTAATGTACCTACAGCATCGACCTCTGCTGTATATTCAGGTAAATCAA 4802484 Query 48263 ACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCT 48322 | ||| || |||||||| ||||| |||||| |||||| ||| |||||||| | | Sbjct 4802485 AACTAACTTTAACATGACTTTGTGCTGCAAGATGATAAATTTCAGTTGGTTGAA-TTTTT 4802543 Query 48323 GA-ATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAAT--- 48378 || || | | | | || || || || || | || |||||||| | | ||| Sbjct 4802544 GACATCAACTTAATTAGGCATGATGAATCAGTCATATCACCATAATGAAGCTGAAATGTT 4802603 Query 48379 --TGATC------------------------ATAAATGTGATCAATTCTATGTGTATTAA 48412 ||||| ||||||||| |||| | ||| ||||||| Sbjct 4802604 GATGATCCTTTGTGTATATTAGGATCAGCATATAAATGTG--CAATACGATGAGTATTAA 4802661 Query 48413 TTAAAGAAGCCCGACGGACAATACCATGAACCTCATACCCCTTTTCAAGAAGAAGTTCTG 48472 | || | | ||||| ||||||||| || ||||| || | | ||| | ||| | Sbjct 4802662 ATGTTGACGATCTACGGATAATACCATGTACAGAGTACCCTTTAGCTATAAGTAATTCAG 4802721 Query 48473 CTAAGTATGAACCATCTTGTCCTGTAATACCAGTGATTAAAGCAACTTT 48521 | || || ||||||||||| || |||||||||||||| | ||||||||| Sbjct 4802722 CCAAATAAGAACCATCTTGACCAGTAATACCAGTGATAATAGCAACTTT 4802770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665489516934840