Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq233 129 7e-25 seq1 118 1e-21 seq16 89.7 6e-13 >seq233 Length=3140 Score = 129 bits (142), Expect = 7e-25 Identities = 668/1050 (64%), Gaps = 38/1050 (4%) Strand=Plus/Minus Query 75899 CAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAAC 75958 |||| || || || ||||| || ||| |||| || ||| |||||| ||| ||||| Sbjct 1921 CAGATAGAAACAGGCACACCTTACATGGTTTATAAAGATCATTGTAATCGGAAAAGTAAT 1862 Query 75959 CAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTA---- 76014 ||| | ||| | ||||| |||||| | || ||||| || || || ||| | || || Sbjct 1861 CAACAAAATCTTGGAACTATCAAGTGTTCTAATCTCTGTACTGAGATTGTTGAATATTGT 1802 Query 76015 -CAC-AGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTAT 76072 ||| |||| | | || |||| || ||| | | || || || ||| | | | Sbjct 1801 TCACCAGATGAAGTTG------CTGTATGTAATCTAGGGTCTATTGCTCTTAATAGATTT 1748 Query 76073 GTCAATGAAGAGACTCGCAC-----TTTTGATTATGAAA-AACTTCATGAAATCACAAAG 76126 || || ||||| | | | |||| | | | | |||| || | | | || Sbjct 1747 GTTGATACAGAGAATGGTAAACCTGTTTTCAATTTCACTCAACTCCACTATGTTGCTAAA 1688 Query 76127 ATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCG 76186 ||| | |||| ||| |||| | || || |||| ||| || ||| | || Sbjct 1687 ATTTTGACCAGGAATTTAAATAAGATTATCGATGTGAATTATTACCCAGTTCCGGAAGCT 1628 Query 76187 CGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTA 76246 ||| ||||||||| ||||| |||| || ||| | |||||||||||| | || |||| | Sbjct 1627 AAAAAATCTAATATGAGACACCGACCAATAGGTATTGGTGTTCAAGGTTTGGCAGATGCA 1568 Query 76247 TTTAT-TTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTAT 76305 || || || || | || ||||| |||| | |||| || || | ||| || Sbjct 1567 TTCATGCTTATG-AGGTATCCATTTACTTCACCTCAAGCTAAAGAACTTAATAAGAAAAT 1509 Query 76306 CTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGG 76365 || ||||| || || || | | ||||||| ||||| ||||||||| | | || Sbjct 1508 TTTCGAAACAATTTACCATGGTGCTTTGGAGGCTTCATGTGAGTTGGCTGAACGCGATGG 1449 Query 76366 TTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTG 76425 ||||||| || | | | || || || | || | || | ||||||| |||||||| Sbjct 1448 ACCCTATGAAACTTATAAAGGATCGCCAGTATCTAAGGGAATTCTTCAGTATGATATGT- 1390 Query 76426 GGAAGGTGAAACCAAGC--TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAG 76483 |||| || | |||||| | | | ||||||||| | || ||| || | Sbjct 1389 GGAATGTCAGGCCAAGCAATTTA-TGGGACTGGGATACATTGAAAGAAAATATTGCTAAA 1331 Query 76484 AAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATC 76543 | ||| | | || | | || | || |||||||| || ||||| || || ||||| Sbjct 1330 CATGGTGTAAGGAATTCTTTGTTACTTGCCCCAATGCCTACTGCCTCAACTGCCCAAATT 1271 Query 76544 TTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTC 76603 | ||||||||||||| |||||||||| ||| |||| |||||| ||| | ||| Sbjct 1270 CTTGGTAATAATGAATCGATTGAACCATATACATCAAATATCTACTCCAGACGTGTCCTT 1211 Query 76604 GCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTC 76663 | ||||| || ||||| || || || | || || | | | || | Sbjct 1210 TCTGGTGATTTCCAAATTGTAAATCCACATCTTCTTAAAGATTTAATTGAACTTAACTTA 1151 Query 76664 TGGTCCAAGGA---TATGAAGGATCTCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATAT 76719 ||| | | || ||||| || | || | ||| | ||| || || || ||||| Sbjct 1150 TGGACTGAAGAACTAATGAATGAAATAATAGCTGATA----ATGGATCTATCCAGAATAT 1095 Query 76720 CTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAA 76779 ||| || || || ||| || | || || || || ||||||||| ||| Sbjct 1094 AAAAGAAATACCCAATAGTATTAAAGAACTTTATAAAACTGTATGGGAAATCTCCCAGAA 1035 Query 76780 AGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAA 76839 |||| | ||||| ||||| || ||||||||| || ||||||||| ||| | | || Sbjct 1034 AGATATTATTGAGATGGCTGCTGATCGTGGTGCTTTTATTGATCAATCACAATCTCTTAA 975 Query 76840 TCTATTCATG--GAAAGTCCAACGATGTCCAAGCTCT-CTTCTATGCATATGTACGCGTG 76896 || | |||| | || ||| | || | ||| | | |||||||||| | ||| || Sbjct 974 TC--TCCATGTCGCTAGACCATC-ATATGCAATTTGTAGTTCTATGCATTTCCACGGTTG 918 Query 76897 GAAACAGGGGCTCAAAACCGGAATGTACTA 76926 ||||| || | ||||| || ||||| || Sbjct 917 GAAACGTGGATTAAAAACGGGGATGTATTA 888 >seq1 Length=5851329 Score = 118 bits (130), Expect = 1e-21 Identities = 351/540 (65%), Gaps = 6/540 (1%) Strand=Plus/Plus Query 75894 AATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGA 75953 |||| |||| || || || | |||||||||||||||||||| |||||| || | Sbjct 2654515 AATCTCAGATAGAAACGGGTATTCCATATATGCTTTACAAGGACCATTGTAATCGTAAAA 2654574 Query 75954 GTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGT 76013 |||| ||| | ||||| |||||||| ||| | ||||||||||| | |||||| | | | Sbjct 2654575 GTAATCAACAAAATTTAGGAACAATAAAGTGTTCAAATCTTTGTGCTGAAATTGTTCAAT 2654634 Query 76014 ACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATG 76073 | | |||| ||||| || ||||| | || || || ||| || | || Sbjct 2654635 TTTCTTCTCCTAATGAAGTTGCTGTATGTAATTTAGGGTCTATTGCACTTAATAATTTTG 2654694 Query 76074 TC---AATGAAGAG---ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGA 76127 || | | ||||| | | |||||||| | || ||||| | || ||||||| Sbjct 2654695 TCATGATTAAAGAGAAAAAACCTGTTTTTGATTTTAAACTCCTTCACAACATTACAAAGA 2654754 Query 76128 TTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGC 76187 || | || || ||| | || || ||||| | || | ||| || |||| || | Sbjct 2654755 TTTTGACAAAGAATTTGAATAAGGTTATTGATATTAACTATTACCCACTTGAAGAAGCAC 2654814 Query 76188 GAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTAT 76247 | || |||| ||| |||||||||| | || || ||||| || || ||| || Sbjct 2654815 GTTTATCAAATACCAAACATCGACCTATTGGAATTGGAGTACAAGGACTTGCAGATACAT 2654874 Query 76248 TTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCT 76307 || | | | || |||||| ||| ||||| | ||| | ||| |||| Sbjct 2654875 TTTTACTCATGAGATATCCATTTGCATCACCAGAAGCTAGGGATCTTAATAGAAAAATCT 2654934 Query 76308 TTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTT 76367 ||||||| || ||||| | | || ||||| | |||||| ||| | || || Sbjct 2654935 TTGAAACTATTTATCATGGTGCACTTGAGGCTTCCTATGAATTAGCTAAGATTCATGGAC 2654994 Query 76368 CCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG 76427 ||||||| || ||||| || || || | || | ||| | ||||| | ||||||||||| Sbjct 2654995 CCTATGAAACGTTTGATGGATCACCTGTATCTAAGGGGATTCTTCAATATGATATGTGGG 2655054 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 65087 TTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGG 65145 |||| || || ||| ||||| || ||||||||||| ||||| ||| || || | ||| Sbjct 4933834 TTGCTTTCGCAGCTGTTGAGGGAATATTCTTCTCCGGTTCATT-TGCTGCCATATTCTGG 4933892 Query 65146 TTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGAT 65205 | |||||||| || | ||||| || || ||||||||| | |||||||||||| Sbjct 4933893 CTTAAGAAGCGCGGCTTGATGCCTGGGTTAACACACTCAAATGAGTTAATTTCCCGAGAT 4933952 Query 65206 GAGGGTCTCCACCAGGAGTTTGC 65228 ||||| || |||| || ||||| Sbjct 4933953 GAGGGGCTACACCGTGATTTTGC 4933975 >seq16 Length=715404 Score = 89.7 bits (98), Expect = 6e-13 Identities = 241/357 (68%), Gaps = 15/357 (4%) Strand=Plus/Minus Query 13544 AAAATTACCGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGA 13603 ||| ||| ||||| || || | || || || || |||| ||||| | | || Sbjct 674073 AAAGTTAAAGGTATCCCAAAACTTGAGGATGCTAATGAGGCTGGTACAAAAAATTCCTAC 674014 Query 13604 AAGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTC 13663 || ||||| |||||| | || ||||| ||||| || ||||| | || ||| | ||||| Sbjct 674013 AAATGTACACTCATTCTTACTGAGGGAGATTCAGCCAAAACATTAGCAGTTTCCGGTCTT 673954 Query 13664 TCTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGT-AAATGTAAGAATGT 13722 ||| || || |||||| | || || || ||||||||||| ||| |||||| |||||| Sbjct 673953 GGTGTTGTAGGACGTGATTATTATGGAGTATTCCCACTTCGTGGTAAAATGT-TGAATGT 673895 Query 13723 TCGGGACGCTTCGGTGGCACAGCTCACAT--CAAACCAGGAGTTCAACGATCTCAAGAAG 13780 || || ||| || ||| | | || ||| | || | || || | | | ||| Sbjct 673894 ACGCGATTGTTCTATGAAGCAGATTA-ATGACAATCAAGAAATTGGAC-ACATGATTAAG 673837 Query 13781 ATCCTTGGTCTTCAACAAGG---AAA--AGACTAC-CAAGATG-TTTCTGAACTT--CGC 13831 || |||||| | ||| | | ||| | ||| |||| | ||||| | Sbjct 673836 ATTCTTGGTTTACAATACCGTTTAAAGTATGATACTGAAGACGAGAGAAAAACTTTGAGA 673777 Query 13832 TATGGTCGTCTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGT 13888 ||||| ||| ||||||||||| ||||| ||| | |||||||| |||||||||||| Sbjct 673776 TATGGACGTGTTATGATTATGGCAGATCAAGATCAGGATGGTTCCCACATCAAGGGT 673720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596565222670560