Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq4 127 4e-24 seq1 113 8e-20 >seq4 Length=2360143 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| || | || | ||| || ||||||||| ||||| | ||||| | Sbjct 1036367 CGAAGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCA 1036308 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||||||||| || |||||||| ||||| || || || ||||| ||||| Sbjct 1036307 TCCTCAAGTTGTTTTCCGGCGAAGATTAATCTTTGTTGGTCTGGTGGAATTCCCTCTTTG 1036248 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | || ||| ||||| |||| ||| || || ||||| || Sbjct 1036247 TCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATG 1036188 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| | || || ||||| || ||||| Sbjct 1036187 GTTTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 1036153 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| || | || | |||||| || || || ||||| | ||||| | Sbjct 1035911 CGAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCGGAAAGAGTTCTTCCA 1035852 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||||||||| || || ||||| ||||| || || || ||||| || || Sbjct 1035851 TCCTCAAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTG 1035792 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | || ||| ||||| |||| ||| || || ||||| || Sbjct 1035791 TCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATG 1035732 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| | || || ||||| || ||||| Sbjct 1035731 GTTTTGCCTGTCAAAGTCTTAACAAAAATCTGCAT 1035697 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || | || | || | |||||| || || || || || | ||||| | Sbjct 1036595 CGAAGAACTAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCA 1036536 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||||||||| || || ||||| ||||| || || || |||||||| ||| Sbjct 1036535 TCCTCAAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTA 1036476 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | ||| ||| ||||| |||| ||| || || ||||| || Sbjct 1036475 TCTTGAATCTTTGACTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATG 1036416 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| | || || || || || ||||| Sbjct 1036415 GTTTTGCCTGTCAAAGTCTTGACGAAGATCTGCAT 1036381 >seq1 Length=5851329 Score = 113 bits (124), Expect = 8e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 ||||||||||| | | ||||| || || || ||||||||||| ||||| ||||| | | Sbjct 5400445 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTAGCT 5400386 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| |||| || ||||| || | ||| ||||| ||||| ||||| ||||| || || Sbjct 5400385 TTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAGA 5400326 Query 193341 GTTTTTACAAATATTTGCATTT 193362 || || || || |||||||||| Sbjct 5400325 GTCTTAACGAAAATTTGCATTT 5400304 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 ||||||||||| | | ||||| || || || || |||||||| || || || || || Sbjct 5040689 CCGGCAAAAATAAGCCGTTGTTGGTCTGGTGGAATACCTTCTTTTTCATGGATCTTAGTC 5040630 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| || ||||||||| | |||||| || |||||||| ||||| || |||| Sbjct 5040629 TTAACATTATCAACAGTATCGGAGGCCTCAACCTCAAGAGTTATTGTTTTTCCAGTTAAA 5040570 Query 193341 GTTTTTACAAATATTTGCAT 193360 |||||||| || |||||||| Sbjct 5040569 GTTTTTACGAAAATTTGCAT 5040550 Score = 95.1 bits (104), Expect = 2e-14 Identities = 186/269 (69%), Gaps = 12/269 (4%) Strand=Plus/Minus Query 38282 ATACACCATAAAATATTAACATATCCCATCGGATCACAACCGTCaaaaaaaTATTTATCG 38341 |||||||| | ||| | |||||| | |||||| ||| |||| |||||||||| Sbjct 3442850 ATACACCACATTATAGCAGTATATCCGTTTGGATCATTACCATCAATGGAATATTTATCA 3442791 Query 38342 TTTAAATATATAGCT-TTATCTATGGCTTCTTGAGGTGTTTTTGTCCATTCTATTAATTT 38400 ||||| | || | || || ||| | |||| ||| | |||||| || ||||| Sbjct 3442790 TTTAATTCAATGGTAATTTTCAATG-CATCTTCAGGATCATCCTTCCATTTTAGTAATTG 3442732 Query 38401 TTTAGCCCAAAACATTCTCATGTAACCATTAATATATCCAAACTTTAATAAATAA----T 38456 ||| ||||| ||||||| | |||||||| ||| | ||| ||| || |||| | Sbjct 3442731 TTTTGCCCAGTACATTCTTACGTAACCATGAATTTTTCC----TTTTATCAATAGCTCTT 3442676 Query 38457 CTTGACAATAATTCCAAAATTTATTATCTGTTTTAGAATATTCTAATTCGTCTAAATTAA 38516 |||| |||||||| | ||| || ||||||| | |||||| || || | || || Sbjct 3442675 TTTGAGCTGCATTCCAAAGTGTATCATTTGTTTTACCAGCTTCTAAATCCTC-AGATGAA 3442617 Query 38517 AATGTTT-ATCTCTTTTATCATTTATATG 38544 || || ||||||||||||||| |||| Sbjct 3442616 TATACTTCATCTCTTTTATCATTCTTATG 3442588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899647798785840