Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4 105 1e-17 seq1 105 1e-17 >seq4 Length=2360143 Score = 105 bits (116), Expect = 1e-17 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || ||||| || ||||| || || | || || || |||| Sbjct 1035469 ATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035528 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || || || ||||| || || || || || ||||| ||| Sbjct 1035529 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1035588 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| || | || || || || || || ||| |||||| | || ||||||||| Sbjct 1035589 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTATAAT 1035648 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || ||| ||| | || ||||| || || Sbjct 1035649 AT-TCAAAAGGAGTCAACCCTTCACTTGGT 1035677 Score = 105 bits (116), Expect = 1e-17 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| || ||||| || || | || || || |||| Sbjct 1036153 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036212 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || || || ||||| ||||| || || || ||||| ||| Sbjct 1036213 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCAA 1036272 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| || | ||||| || || || || ||| |||||| | || ||||||||| Sbjct 1036273 CAAAGATTAATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAAT 1036332 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || ||| ||| | || ||||| || || Sbjct 1036333 AT-TCAAAAGGAGTCAACCCTTCACTTGGT 1036361 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || ||||| || ||||| || || | || || || |||| Sbjct 1035697 ATGCAGATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035756 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || || || ||||| || || || || || ||||| ||| Sbjct 1035757 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1035816 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||| || || || || ||| |||||| | || ||||| || Sbjct 1035817 CAAAGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTACAAC 1035876 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || ||||| || || Sbjct 1035877 ATCCAAAAAGAGTCAACCCTTCACTTGGT 1035905 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||| || ||||| || || | || || || |||| Sbjct 1036381 ATGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036440 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || |||||||| ||||| || || ||||| ||| Sbjct 1036441 GATACAATTGACAATGTCAAGTCAAAGATTCAAGATAAGGAAGGAATCCCACCAGACCAA 1036500 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||| || || || || ||| |||||| | || ||||| || Sbjct 1036501 CAAAGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAAC 1036560 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || ||||| ||||| Sbjct 1036561 ATCCAAAAAGAGTCAACCCTTCACTTAGT 1036589 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||| || ||||| || || | || || || |||| Sbjct 1035925 ATGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035984 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || || || ||||| || ||||| || || ||||| ||| Sbjct 1035985 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAA 1036044 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| || | || || || || || || ||| |||||| | || ||||||||| Sbjct 1036045 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAAT 1036104 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || ||| ||| | || ||||| || || Sbjct 1036105 AT-TCAAAAGGAGTCAACCCTTCACTTGGT 1036133 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| || ||||| || || | || || || |||| Sbjct 1036609 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036668 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || || || ||||| || || || || || ||||| ||| Sbjct 1036669 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1036728 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| || | || || || || || || ||| |||||| | || ||||| || Sbjct 1036729 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAAC 1036788 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || ||||| || || Sbjct 1036789 ATCCAAAAAGAGTCAACCCTTCACTTGGT 1036817 >seq1 Length=5851329 Score = 105 bits (116), Expect = 1e-17 Identities = 299/448 (67%), Gaps = 16/448 (4%) Strand=Plus/Plus Query 25990 CATATATAGAAGAAATATTTG-TGAGAAAGGAATTAGCCGATAATTTTTGCTATTATAAT 26048 ||| | || | |||||||| | | ||||| ||| || || ||| || ||| || | Sbjct 3442472 CATTTTTAAATGAAATATTCGCTTGGAAAGAGATT-GCAGAACATTACTGTTATCATGAG 3442530 Query 26049 AAAAATTA---TAAATCAATAGAATCTTGTCCTAATTGGGCAATTACTACTTTAGATTTA 26105 |||||||| ||| | | | | ||| ||| ||||||| |||||| | Sbjct 3442531 AAAAATTACGATAATTTAGATGGAGCTTTGCCT---TGGGCAAGAGAAACTTTACTCAAA 3442587 Query 26106 Cataaaaatgatgaaagaaataaatttt-ttaatataaaagatttagaatatggaaaaac 26164 ||||| |||||| ||||| || || | | || || | | ||||||||| ||| ||||| Sbjct 3442588 CATAAGAATGATAAAAGAGATGAAGTATATTCATCTGAG-GATTTAGAAGCTGGTAAAAC 3442646 Query 26165 agataataAATTATGGAATTATTGTCAATATTATTTATTGAAATTTGGATATTTAAACGG 26224 | || ||| | | |||||| |||| | | |||||| | ||| | | | || Sbjct 3442647 AAATGATACACTTTGGAATGCAGCTCAAAAAGAGCTATTGATAAAAGGAAAAATTCATGG 3442706 Query 26225 TTATTTGAGAATGTTCTGGGCTAAAAAATTATTAGAATGGACAAAAGATCCACAAGACGC 26284 ||| | ||||||| |||||| ||| ||||| || |||||| | ||||| |||| || Sbjct 3442707 TTACGTAAGAATGTACTGGGCAAAACAATTACTAAAATGGAAGGATGATCCTGAAGATGC 3442766 Query 26285 TATAGATAAATGC-ATATATTTGAATGACAAATATTTTTTCGATGGCTGCGATCCAATGG 26343 || || || | | || | || ||||| ||||||| | ||||| ||||||| | Sbjct 3442767 -ATTGAAAATTACCATTGAATTAAATGATAAATATTCCATTGATGGTAATGATCCAAACG 3442825 Query 26344 GATACGTAAATATATTATGGTGTATAGGAGGTTTGCAC--GATAGAGCGTTCAAAGAAAG 26401 |||| |||| | |||||||| | ||| ||| || || ||| |||||||| Sbjct 3442826 GATATACTGCTATAATGTGGTGTATTTGTGGT--GCAATGGACCAAGGGTTTAAAGAAAG 3442883 Query 26402 AAAAATATATGGGAAAATTAGATTTATG 26429 ||| ||| || ||||||||| |||| Sbjct 3442884 AAAGATAATAGGAAAAATTAGACCTATG 3442911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731866629889200