Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4 125 1e-23 seq1 105 1e-17 >seq4 Length=2360143 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | ||||| | || || || | || | ||| ||| || ||||||||||| Sbjct 1035698 ATACCTCCACGGAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGA-ATATTATAATC 1035640 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | |||| | |||| || | |||||| ||||| ||||||||||| ||||| || || Sbjct 1035639 AGAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGG 1035580 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| ||||| || || ||||| || || || || || || | ||| || | || Sbjct 1035579 TGGGATTCCCTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTC 1035520 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || ||||| |||||||| || || || || |||| ||| || ||||| Sbjct 1035519 TACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCAT 1035469 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | |||||| | || || || | || | ||| ||| || ||||||||||| Sbjct 1036154 ATACCTCCACGAAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGA-ATATTATAATC 1036096 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | |||| | |||| || | |||||| ||||| ||||||||||| ||||| || || Sbjct 1036095 GGAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGG 1036036 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| |||||||| || ||||| || || || || || || | ||| || | || Sbjct 1036035 TGGGATTCCTTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTC 1035976 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || ||||| |||||||| || || || || || | || |||||||| Sbjct 1035975 TACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACGAAGATCTGCAT 1035925 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | |||||| | || || || | || | ||| ||| || ||||||||||| Sbjct 1036382 ATACCTCCACGAAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGA-ATATTATAATC 1036324 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | |||| | |||| || | |||||| || || ||||||||||| ||||| || || Sbjct 1036323 GGAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATTAATCTTTGTTGGTCTGG 1036264 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| ||||| ||||| ||||| || || || || || || | ||| || | || Sbjct 1036263 TGGAATTCCCTCTTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTC 1036204 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || ||||| |||||||| || || || || || | ||| |||||||| Sbjct 1036203 TACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 1036153 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| | || || || | || | |||||| ||| || |||||||| | |||| | Sbjct 1036826 AGACGAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTT 1036767 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| || | |||||| ||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 1036766 CCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCC 1036707 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || ||||| || || || || || || | ||| || | ||||| || ||||| Sbjct 1036706 TTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTG 1036647 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || || || || || | ||| |||||||| Sbjct 1036646 ATGGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 1036609 >seq1 Length=5851329 Score = 105 bits (116), Expect = 1e-17 Identities = 426/673 (63%), Gaps = 17/673 (3%) Strand=Plus/Minus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAATAA 49651 ||||||||||||||| ||||| ||||||||| |||| | | | | | || | Sbjct 4934207 CATAAAATCAAATGGGTTTTTAGTATTATAAAGCTTTTGACAATTAAGTTCTACCAACAG 4934148 Query 49652 TCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTT 49711 |||||| || |||| | ||| | ||||||| | | ||||| || ||| || | Sbjct 4934147 GTGATCGGCAACGTATTCGATATAATCACACATTAAACCTGAGTTCATTCC-AATCATAT 4934089 Query 49712 AAAT-GGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatca 49770 || || | |||||| || | |||| || || || || || | ||||||||| Sbjct 4934088 CAACAGGGAGAGCATCAGTAAGATATTCCTTCTCAATACTAACGGCATCTTTAATTATTT 4934029 Query 49771 taattatattattttttgataatttatatttaatatgattcgca-tatattaaACATGCA 49829 | ||| | || ||| ||| | | | | | || || || | ||||||| Sbjct 4934028 CTTTGATACGTTCTTCAGATGGTTTGTTCTCCA----AGTAGCTGTACATAAGACATGCA 4933973 Query 49830 AAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGC 49889 |||||| |||| ||||| || | || || || ||||| ||||| || ||| Sbjct 4933972 AAATCACGGTGTAGCCCCTCATCTCGGGAAATTAACTCATTTGAGTGTGTTAACCCAGGC 4933913 Query 49890 ATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCC 49949 || || || | ||| |||||||| ||||| | ||||| || || |||||||| ||| Sbjct 4933912 ATCAAGCCGCGCTTCTTAAGCCAGAATATGGCAGCAAATGAACCGGAGAAGAATATTCCC 4933853 Query 49950 TCGACACACGCAAATGCTATTATTCTTGCTCCAAA-----CATTAATTTATCATCTAATA 50004 || ||| || || || |||| | | ||||||| |||| ||||||| | | Sbjct 4933852 TCAACAGCTGCGAAAGCAATTACGCGTTCTCCAAAAGTAGCATT--TTTATCAGC---AA 4933798 Query 50005 TCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 50064 |||| ||| ||||||||| ||||| || |||| | || | | || | ||| || | Sbjct 4933797 TCCATCTTAGAGCCCAATCAGCTTTCTTCCTGATGAATGGGAATTCATCCAAAGCATTGA 4933738 Query 50065 ATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTT 50124 | | | ||| |||||| || | || ||||||| Sbjct 4933737 AAAGCTTATTCCTTTCATCCTGATCACGAATGTAAGTTTCAATAAGCTTTGAGTACATTT 4933678 Query 50125 CAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACT 50184 || ||| | | |||||| || ||||| || || || | ||| || | || Sbjct 4933677 CACTATGAATATTTTCCATGGCAATTTGGAAACCGTAGAAAAAGCGTGCCTCAGGGACCT 4933618 Query 50185 GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGA 50244 ||||||| |||||| ||||||||||||||| ||||||||||| ||||| || | Sbjct 4933617 GAACTTCCTTTGAGAATCTTTCAACTAAATTCTCGTTGACAATACCATCTGATGCAGCAA 4933558 Query 50245 AGAATGCTAAAAC 50257 | || || || || Sbjct 4933557 AAAAGGCCAATAC 4933545 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||| ||||| || | | ||||| || ||||| ||||||||||| ||||| |||||| Sbjct 5400447 TACCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTAG 5400388 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| || | |||||| | || ||||| ||||| || || |||||||| | Sbjct 5400387 CTTTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAA 5400328 Query 192515 ATGTTTTAATAAATATCTGCATTT 192538 || |||| || || ||||||| Sbjct 5400327 GAGTCTTAACGAAAATTTGCATTT 5400304 Score = 91.5 bits (100), Expect = 3e-13 Identities = 218/326 (67%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 43142 CATATATCTAATTTTCCCATATATCTGTCTTTCTTTAAATGCTCTATCGTGTAAACCTCC 43201 |||| ||||||||| || ||||| |||||||||||| || || | ||| | Sbjct 3442911 CATAGGTCTAATTTTTCCTATTATCTTTCTTTCTTTAAACCCTTGGTCCATTGCACCACA 3442852 Query 43202 AATACACCACAATACATTTACATAACCCATTGGATCACATCCGTCaaaaaaaTATTTATC 43261 ||||||||||| || | ||| || |||||||| || |||| |||||||||| Sbjct 3442851 AATACACCACATTATAGCAGTATATCCGTTTGGATCATTACCATCAATGGAATATTTATC 3442792 Query 43262 ATTGAGGTAAATAGCTTTATCGATTGCATCTTGTGGTGAAATCGTCCATTCTAATAATTT 43321 ||| | | ||| | | | | |||||||| || | | |||||| || ||||| Sbjct 3442791 ATTTAATTCAATGGTAATTTTCAATGCATCTTCAGGATCATCCTTCCATTTTAGTAATTG 3442732 Query 43322 CTTAGCCCAAAACATTCTCATATATCCATTAAGATATCCAAATTTTAATAAATAATATTG 43381 || ||||| ||||||| | || |||| || | ||| | | |||| | | ||| Sbjct 3442731 TTTTGCCCAGTACATTCTTACGTAACCATGAATTTTTCCTTTTATCAATAGCTCTTTTTG 3442672 Query 43382 ACAATAATTCCATAATTTATTATCCGTTTTTCCATATTCTAAGTCACTTATACTGAATAA 43441 | |||||| | | ||| || ||||| ||| |||||| || || | | |||||| Sbjct 3442671 AGCTGCATTCCAAAGTGTATCATTTGTTTTACCAGCTTCTAAATC-CTCAGA-TGAATAT 3442614 Query 43442 A--TTAGtttttttATCATTTTTATG 43465 | | | | |||||||||| ||||| Sbjct 3442613 ACTTCATCTCTTTTATCATTCTTATG 3442588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984472595787450