Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4 127 4e-24 seq1 116 7e-21 >seq4 Length=2360143 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || || || | || | ||| || |||||||||||| Sbjct 1036154 ATACCTCCACGAAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCG 1036095 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || | |||||| ||||| || |||||||| |||||||| ||| Sbjct 1036094 GAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGT 1036035 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || || || || || ||||| || | ||| Sbjct 1036034 GGGATTCCTTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCT 1035975 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| |||||||| || || || || || | ||| |||||||| Sbjct 1035974 ACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACGAAGATCTGCAT 1035925 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || || || | || | ||| || |||||||||||| Sbjct 1036382 ATACCTCCACGAAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCG 1036323 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || | |||||| || || || |||||||| |||||||| ||| Sbjct 1036322 GAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATTAATCTTTGTTGGTCTGGT 1036263 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| ||||| || || || || || || ||||| || | ||| Sbjct 1036262 GGAATTCCCTCTTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCT 1036203 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| |||||||| || || || || || | || |||||||| Sbjct 1036202 ACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 1036153 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| || | || || | | || || | |||||| ||||| || |||||||| Sbjct 1035651 AATATTATAATCAGAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCT 1035592 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||||||| ||||| ||||| || || ||||| || || || || || || || Sbjct 1035591 TTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGT 1035532 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | ||||| || ||||| |||||||| || || || || |||| || || || Sbjct 1035531 ATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTG 1035472 Query 172067 CAT 172069 ||| Sbjct 1035471 CAT 1035469 >seq1 Length=5851329 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| | | |||||||| ||||| ||||||||||| ||||| |||||| Sbjct 5400447 TACCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTAG 5400388 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| || |||||||| | || ||||| ||||| || || |||||||| | Sbjct 5400387 CTTTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAA 5400328 Query 172048 ATGTTTTAATGAATATCTGCATTT 172071 || |||| ||| || ||||||| Sbjct 5400327 GAGTCTTAACGAAAATTTGCATTT 5400304 Score = 113 bits (124), Expect = 8e-20 Identities = 348/530 (66%), Gaps = 19/530 (4%) Strand=Plus/Minus Query 38819 CATCACATTGTATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTC 38878 ||| ||| | |||| || |||||||| || || || || || || || ||||| ||||| Sbjct 4934282 CATTACACCGAATTTCTGATATTCAGATACCTTCTTCTCAAAGAAATTGGTTTTACCTTC 4934223 Query 38879 TAATGATA--TTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCT 38936 | ||| | |||| ||||||||||||||| ||||| ||||||||| |||| | Sbjct 4934222 AATTGAGAGATTAAC--CATAAAATCAAATGGGTTTTTAGTATTATAAAGCTTTTGACAA 4934165 Query 38937 ATCAATACATATAATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAA 38996 | | | | || | |||||| || |||| | ||| | ||||||| | | Sbjct 4934164 TTAAGTTCTACCAACAGGTGATCGGCAACGTATTCGATATAATCACACATTAAACCTGAG 4934105 Query 38997 TTCATACCCAATAATTTAAAT-GGTAATGCATCATCAATAAATTCtttttctatttctac 39055 ||||| || ||| || | || || | |||||| || | |||| || || || || Sbjct 4934104 TTCATTCC-AATCATATCAACAGGGAGAGCATCAGTAAGATATTCCTTCTCAATACTAAC 4934046 Query 39056 agcttgtttaattatcataattatattattttttgataatttatatttaatatgattcgc 39115 || | ||||||||| | ||| | || ||| ||| | | | | | | Sbjct 4934045 GGCATCTTTAATTATTTCTTTGATACGTTCTTCAGATGGTTTGTTCTCCAAGTAGCT-GT 4933987 Query 39116 atataGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACT 39175 | ||| | |||||||||||| |||| || || || | || || || ||||| Sbjct 4933986 ACATA--AGACATGCAAAATCACGGTGTAGCCCCTCATCTCGGGAAATTAACTCATTTGA 4933929 Query 39176 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACT 39235 ||||| || ||||| || || | ||| |||||||| ||||| | ||||| || Sbjct 4933928 GTGTGTTAACCCAGGCATCAAGCCGCGCTTCTTAAGCCAGAATATGGCAGCAAATGAACC 4933869 Query 39236 AGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAA-----CATT 39290 || |||||||| ||||| ||| || || || |||| | | ||||||| |||| Sbjct 4933868 GGAGAAGAATATTCCCTCAACAGCTGCGAAAGCAATTACGCGTTCTCCAAAAGTAGCATT 4933809 Query 39291 AATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGAT 39340 ||||||| | |||||| ||| |||||||| ||||| || |||| Sbjct 4933808 --TTTATCAGC---AATCCATCTTAGAGCCCAATCAGCTTTCTTCCTGAT 4933764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905129358564600