Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq233 248 3e-60 seq3 163 8e-35 seq17 147 6e-30 seq2 95.1 4e-14 seq10 91.5 4e-13 >seq233 Length=3140 Score = 248 bits (274), Expect = 3e-60 Identities = 800/1225 (65%), Gaps = 34/1225 (3%) Strand=Plus/Plus Query 155328 TAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCAGATGTAAATGCGATA 155387 |||||||| || || || | ||||| | | |||||| | || ||||||| |||| Sbjct 1494 TAAATTGTTTCGAAAATTTTCTTATTAAGTTCTTTAGCTTGAGGTGAAGTAAATG-GATA 1552 Query 155388 TC-CATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCT 155446 | ||| | |||| || || ||||| ||||| |||||||| | ||| || || || Sbjct 1553 CCTCATAAGCATGAATGCATCTGCCAAACCTTGAACACCAATACCTATTGGTCGGTGTCT 1612 Query 155447 GTAATT-GCTCCTGCTTGTCTTCTTGTT-TGGGTAAAAATTCACATCAATAATGTTATTT 155504 ||| | | | || |||| | ||||||| |||||||||| ||||| |||||| Sbjct 1613 CATATTAGATTTT--TTAGCTTCCGGAACTGGGTAATAATTCACATCGATAATCTTATTT 1670 Query 155505 AAATTTGTAACCAATACCTTGGTTACGTCTGCTAATT---TCACATAGTCAAATGTTTTA 155561 ||||| | ||| | || | || | | || | | || | || | |||| Sbjct 1671 AAATTCCTGGTCAAAATTTTAGCAACATAGTGGAGTTGAGTGAAATTGAAAACAGGTTTA 1730 Query 155562 TC---CTC---ATTTACAAACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTC 155615 | ||| || ||||| || |||| |||||||| | ||||||||||| ||| | Sbjct 1731 CCATTCTCTGTATCAACAAATCTATTAAGAGCAATAGACCCTAGATTACATACAGCAA-C 1789 Query 155616 TCCTTGTCGTCG-CTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCC 155674 | | | | || | ||||| ||||||||| || || ||||||| |||||| || || Sbjct 1790 TTCATCTGGTGAACAATATTCAACAATCTCAGTACAGAGATTAGAACACTTGATAGTTCC 1849 Query 155675 TAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCC 155734 | ||| | || ||| ||| | |||||| ||| || || | ||||| || || || Sbjct 1850 AAGATTTTGTTGATTACTTTTCCGATTACAATGATCTTTATAAACCATGTAAGGTGTGCC 1909 Query 155735 TGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTT 155794 ||| || ||||| || ||||||| |||| | | | || ||||||||||| | Sbjct 1910 TGTTTCTATCTGGCTCTCACAAATCTTTTGCCAAATAACTCTTGCTTTAATTTGCTTTCT 1969 Query 155795 GTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATC 155854 ||| | ||| ||||||||| || || | | | | || ||||| ||||||| Sbjct 1970 GTAACGTTTCTCCTCCTCATATTTAATGTATAATTTCTCGAATTCATCACCCCAACAATC 2029 Query 155855 ACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCA--AATTTTATTACCGATTACA 155912 |||||||| || | || || || | | |||||| || | || | | ||| Sbjct 2030 TTCAAGTCCAGGACATTCATGAGGACACATTAACGACCAGTAAGAATCTTTCTCA--ACA 2087 Query 155913 CGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCC 155972 || | ||| |||| |||| |||||| ||||||| | || | ||| || ||| Sbjct 2088 CGTTTCATGAATAAATCAGGAACCCAAAGCCCATAGAACAAATCTCGTGCTCTTTCCTCT 2147 Query 155973 TCATCGCCGTG-ATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTC 156031 || | | | || |||||| || || | |||||| ||||||| ||| ||| || Sbjct 2148 TC-TGGACCTGTGTTCTTCTTAAGGTCCAGAAATTCCATGATATCAGCATGCCATGGTTC 2206 Query 156032 CAGATACATAGCAAAACTACCATTCC---TCTTGCCACCCTGATCTACATACCGAGCAGT 156088 | ||| || ||||| || || | || ||||| || || ||||| || || || Sbjct 2207 TAAATATATTGCAAATGCTCCGGGCCTTTTATTACCACCTTGGTCAACATAACGTGCCGT 2266 Query 156089 CTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAAT 156148 ||||| || || | | ||| ||||| | |||||||| || ||||| || || | ||| Sbjct 2267 ATTATTAAAAACTCTCAACATTGGAATTAATCCATTGGATGTCCCATTTGTCCCACCAAT 2326 Query 156149 ATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGA 156208 | |||||| | | || | ||||| || || || |||||||||| |||| || Sbjct 2327 AAATGAACCATTAGCCCTAATACAATGAACATTTAAACCGATACCACCTGCAGATTTCGA 2386 Query 156209 AATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGA 156268 || |||||||| || | || | | |||| ||||| ||||||||| | |||||| Sbjct 2387 GATCAAAGCGCATTGTTTCAGTGTGTCGTAAATTCCTTCTATAGAATCACCGGCCATTGT 2446 Query 156269 TAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGT 156328 ||| | | || ||| | ||| ||||| ||||| || || |||| || || | Sbjct 2447 TAGCAAGAAACATGAAGACAGTTGGGGTCGCCTAGTTCCCGCATTAAATAAAGTTGGGGA 2506 Query 156329 TGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTA----ATCTTCTCAA 156384 || ||| |||| |||| | ||||||||| || || ||||| || | ||| | Sbjct 2507 AGCGTGAGTAAACCACTTTTGAGACATATAGTCATAAGTCTCAATAACAGAACTT----A 2562 Query 156385 GATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAA 156444 || |||||||| | | | || | |||| | | ||| ||||| | ||| ||| Sbjct 2563 TATCTTCTCCGTGAATCCCAACCGCAACACGCATCAATAAATGTTGAGGTCTCTCGGCAA 2622 Query 156445 TCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAA 156504 | ||||| || | ||| || | || |||| ||| || || ||||||||| || Sbjct 2623 TTTTCCCATCTATCTTTAAAAGATAGGAACGCTCCAAAGTCTTGAAACCGAAATAAGAAA 2682 Query 156505 ACAGAAAATCACGGTTGTAATCAAT 156529 | |||||| | ||| ||| |||| Sbjct 2683 AGTCAAAATCCCTGTTATAAACAAT 2707 >seq3 Length=2731838 Score = 163 bits (180), Expect = 8e-35 Identities = 251/353 (71%), Gaps = 5/353 (1%) Strand=Plus/Plus Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079 ||||||| | ||||||||||| ||||| ||||| || | | ||| |||||||||| ||| Sbjct 2561479 CCTTTTTCTTCCAACAGCATCTATTTCATCAATAAATAAAATACATGGAGAATTTTTTCT 2561538 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 || || ||||| | || | ||| | |||| |||| |||||| ||||||| | ||| Sbjct 2561539 TGCCATAGCAAACATGTCACGTACTCTAGATGGACCAACACCAACGAACATTTCAAGAAA 2561598 Query 289140 TTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 ||| || | || ||| || || | ||| |||||||| || || ||| | || || Sbjct 2561599 TTCTGATCCAGAAACTGTTATAAAAGGTACGTTTGCTTCACCAGCAGTTGCTTTTGCAAG 2561658 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 | ||| ||||| || ||||||||||| | || ||||||| || | ||| || || Sbjct 2561659 TAATGTTTTACCAGTACCAGGTGGTCCTGTGAGAAGTGCTCCCTTAGGAATTTTGGCACC 2561718 Query 289260 AGCAGACTTATATTTCTCAGGGCTCTTTAA--AAATTCTACAATTTCCTCAAGTTCATAT 289317 | ||| |||| ||| || | ||||| |||||| |||| |||| || ||| | Sbjct 2561719 GAGATTCTTGTATTGGTCA-GGATTTTTAAGGAAATTC-ACAAATTCCATAATTTCTATT 2561776 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATTAATATCGTTCTT 289370 ||||| || |||||||| || ||||| ||| || | ||||| || ||||| Sbjct 2561777 TTTGCTTCCTCACATCCAGCGACATCCCTAAACGTTACTTTAATGTC-TTCTT 2561828 >seq17 Length=713775 Score = 147 bits (162), Expect = 6e-30 Identities = 236/337 (70%), Gaps = 4/337 (1%) Strand=Plus/Minus Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079 |||||| ||||| || ||||||||||||||| ||||| | ||| || | ||| | || Sbjct 279180 CCTTTTGGAACCAATAGAATCAATTTCGTCAATAAAAATAATACAAGGTGCATTCTTCCT 279121 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 || || ||||||| ||||||| | | |||||| | ||||| | ||||| |||| Sbjct 279120 AGCTATGTTAAATAATGCTCTTACTCTTGCTGCTCCTCGTCCAACTAAAATTTCCTCAAA 279061 Query 289140 TTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 ||||| | ||| || | |||| ||| |||||||| || || ||||| | |||| Sbjct 279060 CTCAGATCCTGATTTATGGAAAAATGGTACTTTTGCTTCACCAGCAACTGCACGAGCCAA 279001 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 | || ||||| ||||||||||| || | | | ||| |||||||||| ||| | || Sbjct 279000 TAAGGTTTTACCAGTTCCAGGTGGACCAACAAGCAAAACACCCTTTGGTAACTTTCCACC 278941 Query 289260 AGCAGACTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 | | || |||||||| ||| ||| ||||||||| |||| |||||| | Sbjct 278940 A--ATCATTGCATATTTCTTAGGATCACGTAAGTATTCTACAACTTCCATTAGTTCAGTT 278883 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 ||||| ||||| ||| |||||| | || |||| Sbjct 278882 TTTGCTTCATCTATTCCCTTGACATCATCGAACGTAA 278846 Score = 143 bits (158), Expect = 8e-29 Identities = 235/337 (70%), Gaps = 4/337 (1%) Strand=Plus/Minus Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079 |||||| ||||| || ||||||||||||||| ||||| | ||| || | ||| | || Sbjct 282928 CCTTTTGGAACCAATAGAATCAATTTCGTCAATAAAAATAATACAAGGTGCATTCTTCCT 282869 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 || || ||||||| ||||||| | | |||||| | ||||| | ||| | |||| Sbjct 282868 GGCCATGTTAAATAATGCTCTTACTCTTGCTGCTCCTTGTCCAACTAAAATTCCCTCAAA 282809 Query 289140 TTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 ||||| | ||| || | |||| ||| |||||||| || || ||||| | |||| Sbjct 282808 CTCAGATCCTGATTTATGGAAAAATGGTACTTTTGCTTCACCAGCAACTGCACGAGCCAA 282749 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 | || ||||| ||||||||||| || | | | ||| |||||||||| ||| | || Sbjct 282748 TAAGGTTTTACCAGTTCCAGGTGGACCAACAAGCAAAACACCCTTTGGTAACTTTCCACC 282689 Query 289260 AGCAGACTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 | | || |||||||| ||| ||| ||||||||| |||| |||||| | Sbjct 282688 A--ATCATTGCATATTTCTTAGGATCACGTAAGTATTCTACAACTTCCATTAGTTCAGTT 282631 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 ||||| ||||| ||| |||||| | || |||| Sbjct 282630 TTTGCTTCATCTATTCCCTTGACATCATCGAATGTAA 282594 >seq2 Length=3462877 Score = 95.1 bits (104), Expect = 4e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 304029 TAAGTTGGGGTCAGGTGTAATTACAGAGCGAGCACTAAAATCAACACGCTTACCCATAAG 304088 |||||| || || |||||||| || | ||||| ||||||||||| |||||||| | Sbjct 1929525 TAAGTTTGGATCTGGTGTAATAACTGTACGAGCTGAGAAATCAACACGTTTACCCATCAA 1929584 Query 304089 ATTACCCCTAACACGACCGCCCTTACCGTTTAGCCTATCCTTGATTGCCTTCAGGGGGCG 304148 ||| || | || |||||| | ||||| || | || | || |||| ||| || || || Sbjct 1929585 ATTTCCACGAATACGACCCTCTTTACCTTTCAATCTTTGTTTTATTGACTTTAGTGGACG 1929644 Query 304149 ACCCGAACGCTGGGCTACAGCCGCAACGCCAGGAATCTTATTGTCTACCAGCGTCGCAAC 304208 ||| || || | |||| |||| |||||||| |||||| || | || || || Sbjct 1929645 ACCAGACTTTTGTGTAGCAGCAGCAATACCAGGAATAGAATTGTCGACAAAAGTAGCGAC 1929704 Query 304209 ATAATATTGCAG 304220 || |||||| || Sbjct 1929705 ATGATATTGAAG 1929716 >seq10 Length=1069219 Score = 91.5 bits (100), Expect = 4e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 || ||| ||||| | |||||||| |||| ||| |||| | | ||| || | || | Sbjct 598870 ATCTCTAACGGTTAAATCATAACAAATCTTAAGACCTTCTAAATGCTTAATAATACATCT 598811 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 || | |||||||| || ||||| |||||||||||||| ||||| ||||||| | Sbjct 598810 TTGGAGATAACCAGAACGTGAAGTTTTAACAGCTGTATCAATAAGACCTTCACGACCTGC 598751 Query 302658 CATAGCATGGAAGAATAGCTCTT 302680 ||||| ||||||||||| |||| Sbjct 598750 CATAGTATGGAAGAATAATTCTT 598728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471806530551819