Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_021343.1 Length=35430 Score E Sequences producing significant alignments: (Bits) Value seq220 201 3e-47 >seq220 Length=3625 Score = 201 bits (222), Expect = 3e-47 Identities = 636/976 (65%), Gaps = 26/976 (3%) Strand=Plus/Minus Query 10651 ACGCCGTGACCGATGCCGGTCGTATCGATCGCGATATAGGTCACGTGGTAGCGCTGCGTC 10710 || |||||||| | |||||||| ||||| ||||||||||||||| ||| | | ||| Sbjct 3562 ACCCCGTGACCAACGCCGGTCGAGTCGATGCCGATATAGGTCACGTTGTACTGTTCGGTC 3503 Query 10711 AATTCGCGGATTTTCTCCGCCTGCGTTTCGAAGTCGATGCCCTTCCAACGATGCCGTTCG 10770 | || ||| || ||||| | |||||| || || ||| | || || || Sbjct 3502 AGTTTTTTGATGGCGTCAGCCTGGGCGCGGAAGTCCATCCCGCGCCACTGGTGACGCTCA 3443 Query 10771 AGCACACGGAATTTTCCGTTCGGCTGCTCGGGCGGGGCGATCACGACGCACCCGGCCGAG 10830 || | ||||| || ||| |||| | ||||| || | ||| ||||| ||||| | Sbjct 3442 AGAATGCGGAACTTACCGCCCGGCACGGCTGGCGGTGCCACCACCACGCATCCGGCGCTG 3383 Query 10831 TCGCC------AGTA---AGGGCAGGGTCGTAGCCGATCCATACCGGCTTCCAGCCGAAC 10881 ||||| ||| || ||||| || |||||||| || |||||| ||| Sbjct 3382 TCGCCGTTTTGCGTACCTTTCGCCGGGTCATAACCGATCCACACTTCGCGCCAGCCAAAC 3323 Query 10882 GGCCGATCGAGCAACGGC-TTCACGTCCGTCCACACGTCCCATGAATCGACCATGCACGC 10940 || || |||| | || | | ||| ||||| || ||||| || ||||||||||| Sbjct 3322 GGGCG-CAGAGCCAGTGCATGAAAGTCGGTCCAGACTTCCCAGCTGTCCACCATGCACGC 3264 Query 10941 CTGTACGAGCCGGAAGGCGAACACCGATGAGGTGTCGTCCACGAACTGGCACATGTACAG 11000 ||| | | || | ||| || || | | |||||||| |||| |||||| ||| Sbjct 3263 CTGCAGCTCGCTGAGCGGGAATACGGACGCGAGATCGTCCACAAACTCGCACATCAGCAG 3204 Query 11001 GTTTTCGAAATCGGCGGGGCTGTTCGTTGAGCGCAAGTCCTCCAGATCCA----GTTTCG 11056 ||| | | | ||||| ||||||| | |||||| | || || || | ||| | Sbjct 3203 GTTCTGGTATTCGGCCGGGCTGTACTCCATGCGCAACTGGTCAAGGTCGAAAAGGTTAC- 3145 Query 11057 TGAATCCGGATGCG-ATGGCATCCTCGGCCGTGACGATCTGCCGCCATTGCCCGTCGCCG 11115 |||| | ||| | ||||| || | ||||| ||||| || |||||||||| || Sbjct 3144 ---ATCC-GCCGCGCACTGCATCTTCCACGGTGACTATCTGGCGGTATTGCCCGTCTGCG 3089 Query 11116 CACTGGCGCCCGCGTGCAAGCGACGTATGGGAAATGTCGATCTCGACGCGCTCGTCGTCG 11175 ||| | | ||| | || || | ||||| | |||||| || || ||| | | | Sbjct 3088 CACAGCAGGCCGGGGGCCAGATTGCTGTGGGACAGGTCGATGTCCACCTTATCGGCTTTG 3029 Query 11176 GGACGGTCGCGGTTGAAGTCCGCGCCAGTCCAAAACGCATAGGCTTCGTGCGTCGTTGTG 11235 || | |||||||| ||| || | ||| |||| ||| || ||| ||| || Sbjct 3028 TTGCGCCCACGGTTGAACAGCGCACCGGACCAGAACGGATAAGCACTGTGGGTCAGGCTG 2969 Query 11236 GATGGCGTAGAGAAGTGCGTCATCCGCAAATGCGAATGCGTCGCCATCCCCTTCGCTACC 11295 |||||||| || || | || ||| | | || | ||||| || || || Sbjct 2968 GATGGCGTGGAAAAATAGGTTTGTCGCCATTTTTTGTGAATAGCCATACCGGAAGCCACT 2909 Query 11296 TTGTTCAGTTCGGCAAACTTGCTGACCCAGAAATACTCATCGAAATACAGGTCGCCGTTG 11355 ||| |||||| || || | ||||||||||||||| | |||||| | |||| || Sbjct 2908 TTGCGCAGTTCCTGGAATTTCGGTATCCAGAAATACTCATCCAGATACAGATTGCCGGTG 2849 Query 11356 TAGCTTTGGGCCGTGCGTGAACTGGTGCCGAGAAAAATCAATTCCGCACCGTTCGACAAC 11415 ||||| ||||| ||||| | | |||||||||| || | || ||||| | | | Sbjct 2848 TAGCTCTGGGCGGTGCGGGCATTGGTGCCGAGGAAGTAAAGCGTGGCTCCGTTAGGAAGC 2789 Query 11416 CGCATCGGATCGCCGGTTAGCTCAACCTGCGCAGCGTTCCACGCAAATTTCTGGATATAC 11475 |||||||||||| | ||||| |||| | | || || || | ||| ||| Sbjct 2788 ACCATCGGATCGCCTTTCAGCTCCACCTCGACTTCTTT---GGCGAAGTCGATGATGTAC 2732 Query 11476 GAGCGGAACACGTGTGCCTGTGCGCGGCTCGCCGACAGAAAAATCTGATT-CGTGCCGGT 11534 || ||||| |||||||| || || || || |||||||| || ||| ||||| Sbjct 2731 TGCTTAAAAACGTGAGCCTGTGCCTTACTGGCAGAAAGGAAAATCTGGTTACGT-CCGGT 2673 Query 11535 TTCCAGCGCGCGCACGAGTGCCTCGTGCGCGAAATAGAACGTGGCGCCGATCTGTCGTGA 11594 ||| ||| | || || || | || || || || || ||||||||||| ||||| Sbjct 2672 AAGCAGGGCGTCAATCAGGGCTTCACGGGCAAAGTAAAAGGTCGCGCCGATCTGGCGTGA 2613 Query 11595 CTTCAGGATGTTGCGG 11610 |||||| | ||||||| Sbjct 2612 CTTCAGCAGGTTGCGG 2597 Score = 105 bits (116), Expect = 2e-18 Identities = 157/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 13969 CTCGCGGCCAGTATGGTCATCAGCCAGAAGCGCATCGGCAATCTGCAAGCCATGCGGGTG 14028 || || ||| |||| ||||||| ||||| ||||| || ||||| ||| |||| | | Sbjct 357 CTGGCTGCCGATATGATCATCAGTCAGAAACGCATGGGTGGCCTGCAGGCCGTGCGTGCG 298 Query 14029 CCGTTCATGCCGCGCGGCAA---GCTGTTCATCACCATCCCGAAAAACCTGTCGATCTAC 14085 |||||| | |||| || || |||| | |||||| | | | |||||||| || ||| Sbjct 297 CCGTTCTTCCCGC-CG--AATGCGCTGCTGATCACCCGTCTGGATAACCTGTCCATTTAC 241 Query 14086 TGGCAAATCGGCGGCCGTCGGCGCGCGGTGATCGACAACCCGAAGCGCGATCAGGTCGAG 14145 ||||| | | ||| || || |||| |||||||||||||| || || | | | || Sbjct 240 TGGCAGGAGGACACCCGCCGCCGTTCGGTTATCGACAACCCGAAACGTGACCGGATTGAA 181 Query 14146 TTCTTCGAATCGAGCAACGAGGCGTATGTGGTCGAGGACT 14185 ||| ||||| ||||| || |||||||| ||||||| Sbjct 180 AACTTTGAATCCGTTAACGAAGCCTATGTGGTTGAGGACT 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113253610546048