Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq220 419 4e-113 >seq220 Length=3625 Score = 419 bits (464), Expect = 4e-113 Identities = 827/1221 (68%), Gaps = 23/1221 (2%) Strand=Plus/Minus Query 1505 ACGCCGAGACCGAGGCCGGTCGCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTG 1564 || ||| |||| | |||||||| ||| |||||||| || |||||||| | || || Sbjct 3562 ACCCCGTGACCAACGCCGGTCGAGTCGATGCCGATATAGGTCACGTTGTACTGTTCGGTC 3503 Query 1565 AGCCTGCGGATGCCTTCTGCCTGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCC 1624 || | |||| | || ||||| ||| |||||||| || ||||||||||||||| Sbjct 3502 AGTTTTTTGATGGCGTCAGCCTGGGCGCGGAAGTCCATCCCGCGCCACTGGTGACGCTCA 3443 Query 1625 AGCATGCGAAACTTGCCACCCGAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTG 1684 || ||||| ||||| || |||| || | ||||| || | || || |||||||| ||| Sbjct 3442 AGAATGCGGAACTTACCGCCCGGCACGGCTGGCGGTGCCACCACCACGCATCCGGCGCTG 3383 Query 1685 TCGCCAGTGTGGGA---------CGGGTCGTAGCCAATCCAGACCGGGCGCGAGCCGAAC 1735 ||||| | || | |||||| || || ||||| || |||| |||| ||| Sbjct 3382 TCGCCGTTTTGCGTACCTTTCGCCGGGTCATAACCGATCCACACTTCGCGCCAGCCAAAC 3323 Query 1736 GGGTGGTCGGCGAACGGGGCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGC 1795 ||| | || | | ||||| ||| |||| ||| |||||||| | Sbjct 3322 GGGCGCAGAGCCAGTGCATGAAAGTCGGTCCAGACTTCCCAGCTGTCCACCATGCACGCC 3263 Query 1796 TGCAGCTCCTCGAACGGGAATACCGATGCCTTATCGTCGACAAACTCGCACATAAACAGG 1855 |||||||| || ||||||||| || || |||||| |||||||||||||| | |||| Sbjct 3262 TGCAGCTCGCTGAGCGGGAATACGGACGCGAGATCGTCCACAAACTCGCACATCAGCAGG 3203 Query 1856 TTCTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTGCAG 1915 |||| | || | |||| || | | |||||| |||||||| ||| | || Sbjct 3202 TTCTGGTATTCGGCCGGGCTGTACTCCATGCGCAACTGGTCAAGGTCGAAAAGGTTACAT 3143 Query 1916 CCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAAGA 1975 || ||| | || || || | ||||| ||||| || | || ||||| ||||| || Sbjct 3142 CCGCCGCGCACTGCATCTTCCACGGTGACTATCTGGCGGTATTGCCCGTCTGCGCACAGC 3083 Query 1976 AGCCCACCGGCGAGCGCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCAGCACTGGCG 2035 || || ||| || |||||| | |||||| || | | | | || || | Sbjct 3082 AGGCCGGGGGCCAGATTGCTGTGGGACAGGTCGATGTCCACC---TTATCGGCTTTGTTG 3026 Query 2036 CGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTGGAA 2095 ||||| |||||||||| | || |||||||| |||||||| | ||| | ||| |||| Sbjct 3025 CGCCCACGGTTGAACAGCGCACCGGACCAGAACGGATAAGCACTGTGGGTCAGGCTGGAT 2966 Query 2096 GGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGATGCGACTTTG 2155 || || ||||| || ||| ||| | || || ||||| || || || |||||| Sbjct 2965 GGCGTGGAAAAATAGGTTTGTCGCCATTTTTTGTGAATAGCCATACCGGAAGCCACTTTG 2906 Query 2156 CGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGG 2215 ||||| | ||| || ||||| |||||||| ||||| | |||||| | |||| | | | Sbjct 2905 CGCAGTTCCTGGAATTTCGGTATCCAGAAATACTCATCCAGATACAGATTGCCGGTGTAG 2846 Query 2216 CTTTGTGCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTT--GTTGCCGA 2273 || || |||||| || |||||||||||| || ||| | || ||||| | || Sbjct 2845 CTCTGGGCGGTGCGGGCATTGGTGCCGAGGAAGTAAAGCGTGGCTCCGTTAGGAAGC--- 2789 Query 2274 TAACAATCGGGTCGCCGGTCAGGTCGACGTCAACCAGTCGCGCAAACTGGATGATGTATT 2333 || ||||| ||||| |||| || || || || | || || | ||||||||| | Sbjct 2788 --ACCATCGGATCGCCTTTCAGCTCCACCTCGACTTCTTTGGCGAAGTCGATGATGTACT 2731 Query 2334 CCCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCT 2393 | || |||| |||||| | |||||||| || || |||||||||||| | ||||| Sbjct 2730 GCTTAAAAACGTGAGCCTGTGCCTTACTGGCAGAAAGGAAAATCTGGTTACGTCCGGTAA 2671 Query 2394 TGAGCGCGCGCAGCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATT 2453 || ||| | ||| || || |||| |||||| || |||||||| |||||||| || | Sbjct 2670 GCAGGGCGTCAATCAGGGCTTCACGGGCAAAGTAAAAGGTCGCGCCGATCTGGCGTGACT 2611 Query 2454 TGAGAATATCGCGAATACGGTGCGCCAGTCCTGCCCGGTACCACTGCAACTGGTATTCGA 2513 | || | | ||| || |||| | ||| || |||| || |||||| | || Sbjct 2610 TCAGCAGGTTGCGGATGCGGTTGGTTTTTCCGGCTTCCCACCAGTGGCGCTGGTAGTTGA 2551 Query 2514 AAGACTGGTCGAA--GAAAATTTCTTCCAGCTTTGCGACAGCCTCATCGCTGAAAAAGTT 2571 | ||| ||| |||||| ||||||||||| | | |||||| |||| | || Sbjct 2550 A--CATGGAGGAATGGAAAATCTCTTCCAGCTTCTCAATCTGTTCATCGGTGAAGACATT 2493 Query 2572 CTTTTTCGGCCTCTTACGCTCCCCTTTGTTACGGTTGGCAACGTTGGGGTTAAGGTCGGC 2631 ||||| ||| ||| |||||||| |||||||| ||||| ||||| | |||||| Sbjct 2492 CTTTTCCGGTTGACGGCGCGGGCCTTTGTTGCGGTTGGCGACGTTAGGGTTTAAGTCGGC 2433 Query 2632 CTCGTTGCCGGTCTGGCTGTAGCGGTTGACGCGCGCCAGTCGCTCAATCTGCCGCCCGAG 2691 ||||||||| | | | | | || ||||| | ||||| ||| ||| | || Sbjct 2432 TTCGTTGCCGCCATTGTTAAACTTGCCGATCCGCGCGTGGCGCTCCGACTGGCGCGCCAG 2373 Query 2692 CAGGTCAATCTCTTTGAAGTC 2712 ||||||||| |||||||| || Sbjct 2372 CAGGTCAATTTCTTTGAAATC 2352 Score = 273 bits (302), Expect = 4e-69 Identities = 514/749 (69%), Gaps = 20/749 (3%) Strand=Plus/Minus Query 4394 CTCGACCTGTGGGCGCGTTTTCAGGACTTCCAGCGCCGCATCCGCGACGCCATTGTCAAG 4453 || |||||||||||||||| |||||| ||||||| || ||||| ||||||| || || Sbjct 780 CTGGACCTGTGGGCGCGTTATCAGGATTTCCAGCTGCGTATCCGTAACGCCATCGTGAAA 721 Query 4454 CGTCAGGCGCTCGATTTCATCATGGCCGGTTTTAACGGTACCACCCGCGCCGCCACCTCT 4513 ||||||||||| || ||||||| ||| |||||||| | || || |||||| Sbjct 720 CGTCAGGCGCTGGACCGCATCATGATCGGCTTTAACGGCGTGAAGCGTGCGAAAACCTCT 661 Query 4514 GACCGCACCAAAAATCCGATGCTGCAGGATGTTGCCGTCGGCTGGCTGCAGAAATACCGC 4573 |||| | | |||| ||| ||||||||||||| | ||||||||||||||| ||| Sbjct 660 AACCGTAGCGAAAACCCGCTGCTGCAGGATGTGAACAAAGGCTGGCTGCAGAAAATCCGT 601 Query 4574 AATGAAGCCCCGACGCGTGTGATGAGCAATATCACCGATGCTGACGGTAAGGTCGTTTCG 4633 | || || ||| | || ||| ||| | |||| | | |||| | | || Sbjct 600 GAGGATGCACCGGATCACGTCATGGGCAGCACCACCA---CGGGCGGTGAAACCACACCG 544 Query 4634 GCAGTGATTCGCGTCGGTCGAAACG--GCGACTATGAGAACCTCGACGCGCTGGTGATGG 4691 | | | | ||||| |||| | | || |||| ||||| ||||| ||||||||| Sbjct 543 GGTGCGGTGAAAGTCGG--GAAAGGTGGAGAATATGCCAACCTGGACGCCGTGGTGATGG 486 Query 4692 ATGCGACCAATAACCTGATTGACGAGGTTTATCAGGATGACCCGAAACTCGTTGCCATCG 4751 |||| |||| | || || |||| ||| || ||||| || | || || | || Sbjct 485 ATGCCGTCAATGAGCTTATCGACGTGGTCTACCAGGACGATGACGATCTGGTGGTGATTT 426 Query 4752 TTGGCCGTAAGCTGCTGGCCGACAAATATTTCCCGCTGGTGAACAAGCCGCAGGAAAACA 4811 ||| ||| |||||||| | ||||| |||||||||||||| ||||| |||||||||| Sbjct 425 GTGGTCGTGAGCTGCTGTCTGACAAGTATTTCCCGCTGGTCAACAAAGACCAGGAAAACA 366 Query 4812 GCGAGGCGCTCGCGGCAGATATCATCATCAGCCAGAAGCGAATCGGCAACCTGCCTGCTG 4871 | || || || || ||||| |||||||| ||||| || || || ||||| || | Sbjct 365 GTGAAAAACTGGCTGCCGATATGATCATCAGTCAGAAACGCATGGGTGGCCTGCAGGCCG 306 Query 4872 TGCGTGTGCCGTACTTCCCGGCGAATGCCGTGTTAGTGACCACGCTGGAAAACCTCTCTA 4931 |||||| ||||| ||||||| ||||||| || | | ||| ||||| ||||| || | Sbjct 305 TGCGTGCGCCGTTCTTCCCGCCGAATGCGCTGCTGATCACCCGTCTGGATAACCTGTCCA 246 Query 4932 TCTATTTCATGGATGAGAGCCACCGCCGCAGCATTGATGAAAACCCGAAAAAAGACTGCG 4991 | || | ||| || | || |||||| || || ||||||||| ||| | Sbjct 245 TTTACTGGCAGGAGGACACCCGCCGCCGTTCGGTTATCGACAACCCGAAACGTGACCGGA 186 Query 4992 TGGAAAACTACGAGTCGATGAATATCGACTATGTGGTCGAGGCGTATGCCGCCG-GGTGC 5050 | ||||||| || || | || | ||||||||| |||| || |||| | | || Sbjct 185 TTGAAAACTTTGAATCCGTTAACGAAGCCTATGTGGTTGAGGACTA--CCGCTGCGCAGC 128 Query 5051 -CTGCTGGAAAACATCACCCTGGGCGATTTCACCGCACCTGCAGCACCGGAAAGCGGAGC 5109 ||| ||||||||||| | || || |||| ||| | ||| ||| |||||| Sbjct 127 ACTGGTGGAAAACATCCAGATTGGTGACTTCAGCGCCGCCGCA------GAAGCCGGAGC 74 Query 5110 CTAAACCATGA---CGAGCCCCGCACAGC 5135 ||| |||||| ||| ||||||| || Sbjct 73 GTAACCCATGAGCCTGAGTCCCGCACGGC 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95052137422576