Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015-
06-02] 587 sequences; 52,178,999 total letters
Query= NC_021774.1
Length=29742
Score E
Sequences producing significant alignments: (Bits) Value
seq220 419 4e-113
>seq220
Length=3625
Score = 419 bits (464), Expect = 4e-113
Identities = 827/1221 (68%), Gaps = 23/1221 (2%)
Strand=Plus/Minus
Query 1505 ACGCCGAGACCGAGGCCGGTCGCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTG 1564
|| ||| |||| | |||||||| ||| |||||||| || |||||||| | || ||
Sbjct 3562 ACCCCGTGACCAACGCCGGTCGAGTCGATGCCGATATAGGTCACGTTGTACTGTTCGGTC 3503
Query 1565 AGCCTGCGGATGCCTTCTGCCTGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCC 1624
|| | |||| | || ||||| ||| |||||||| || |||||||||||||||
Sbjct 3502 AGTTTTTTGATGGCGTCAGCCTGGGCGCGGAAGTCCATCCCGCGCCACTGGTGACGCTCA 3443
Query 1625 AGCATGCGAAACTTGCCACCCGAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTG 1684
|| ||||| ||||| || |||| || | ||||| || | || || |||||||| |||
Sbjct 3442 AGAATGCGGAACTTACCGCCCGGCACGGCTGGCGGTGCCACCACCACGCATCCGGCGCTG 3383
Query 1685 TCGCCAGTGTGGGA---------CGGGTCGTAGCCAATCCAGACCGGGCGCGAGCCGAAC 1735
||||| | || | |||||| || || ||||| || |||| |||| |||
Sbjct 3382 TCGCCGTTTTGCGTACCTTTCGCCGGGTCATAACCGATCCACACTTCGCGCCAGCCAAAC 3323
Query 1736 GGGTGGTCGGCGAACGGGGCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGC 1795
||| | || | | ||||| ||| |||| ||| |||||||| |
Sbjct 3322 GGGCGCAGAGCCAGTGCATGAAAGTCGGTCCAGACTTCCCAGCTGTCCACCATGCACGCC 3263
Query 1796 TGCAGCTCCTCGAACGGGAATACCGATGCCTTATCGTCGACAAACTCGCACATAAACAGG 1855
|||||||| || ||||||||| || || |||||| |||||||||||||| | ||||
Sbjct 3262 TGCAGCTCGCTGAGCGGGAATACGGACGCGAGATCGTCCACAAACTCGCACATCAGCAGG 3203
Query 1856 TTCTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTGCAG 1915
|||| | || | |||| || | | |||||| |||||||| ||| | ||
Sbjct 3202 TTCTGGTATTCGGCCGGGCTGTACTCCATGCGCAACTGGTCAAGGTCGAAAAGGTTACAT 3143
Query 1916 CCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAAGA 1975
|| ||| | || || || | ||||| ||||| || | || ||||| ||||| ||
Sbjct 3142 CCGCCGCGCACTGCATCTTCCACGGTGACTATCTGGCGGTATTGCCCGTCTGCGCACAGC 3083
Query 1976 AGCCCACCGGCGAGCGCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCAGCACTGGCG 2035
|| || ||| || |||||| | |||||| || | | | | || || |
Sbjct 3082 AGGCCGGGGGCCAGATTGCTGTGGGACAGGTCGATGTCCACC---TTATCGGCTTTGTTG 3026
Query 2036 CGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTGGAA 2095
||||| |||||||||| | || |||||||| |||||||| | ||| | ||| ||||
Sbjct 3025 CGCCCACGGTTGAACAGCGCACCGGACCAGAACGGATAAGCACTGTGGGTCAGGCTGGAT 2966
Query 2096 GGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGATGCGACTTTG 2155
|| || ||||| || ||| ||| | || || ||||| || || || ||||||
Sbjct 2965 GGCGTGGAAAAATAGGTTTGTCGCCATTTTTTGTGAATAGCCATACCGGAAGCCACTTTG 2906
Query 2156 CGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGG 2215
||||| | ||| || ||||| |||||||| ||||| | |||||| | |||| | | |
Sbjct 2905 CGCAGTTCCTGGAATTTCGGTATCCAGAAATACTCATCCAGATACAGATTGCCGGTGTAG 2846
Query 2216 CTTTGTGCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTT--GTTGCCGA 2273
|| || |||||| || |||||||||||| || ||| | || ||||| | ||
Sbjct 2845 CTCTGGGCGGTGCGGGCATTGGTGCCGAGGAAGTAAAGCGTGGCTCCGTTAGGAAGC--- 2789
Query 2274 TAACAATCGGGTCGCCGGTCAGGTCGACGTCAACCAGTCGCGCAAACTGGATGATGTATT 2333
|| ||||| ||||| |||| || || || || | || || | ||||||||| |
Sbjct 2788 --ACCATCGGATCGCCTTTCAGCTCCACCTCGACTTCTTTGGCGAAGTCGATGATGTACT 2731
Query 2334 CCCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCT 2393
| || |||| |||||| | |||||||| || || |||||||||||| | |||||
Sbjct 2730 GCTTAAAAACGTGAGCCTGTGCCTTACTGGCAGAAAGGAAAATCTGGTTACGTCCGGTAA 2671
Query 2394 TGAGCGCGCGCAGCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATT 2453
|| ||| | ||| || || |||| |||||| || |||||||| |||||||| || |
Sbjct 2670 GCAGGGCGTCAATCAGGGCTTCACGGGCAAAGTAAAAGGTCGCGCCGATCTGGCGTGACT 2611
Query 2454 TGAGAATATCGCGAATACGGTGCGCCAGTCCTGCCCGGTACCACTGCAACTGGTATTCGA 2513
| || | | ||| || |||| | ||| || |||| || |||||| | ||
Sbjct 2610 TCAGCAGGTTGCGGATGCGGTTGGTTTTTCCGGCTTCCCACCAGTGGCGCTGGTAGTTGA 2551
Query 2514 AAGACTGGTCGAA--GAAAATTTCTTCCAGCTTTGCGACAGCCTCATCGCTGAAAAAGTT 2571
| ||| ||| |||||| ||||||||||| | | |||||| |||| | ||
Sbjct 2550 A--CATGGAGGAATGGAAAATCTCTTCCAGCTTCTCAATCTGTTCATCGGTGAAGACATT 2493
Query 2572 CTTTTTCGGCCTCTTACGCTCCCCTTTGTTACGGTTGGCAACGTTGGGGTTAAGGTCGGC 2631
||||| ||| ||| |||||||| |||||||| ||||| ||||| | ||||||
Sbjct 2492 CTTTTCCGGTTGACGGCGCGGGCCTTTGTTGCGGTTGGCGACGTTAGGGTTTAAGTCGGC 2433
Query 2632 CTCGTTGCCGGTCTGGCTGTAGCGGTTGACGCGCGCCAGTCGCTCAATCTGCCGCCCGAG 2691
||||||||| | | | | | || ||||| | ||||| ||| ||| | ||
Sbjct 2432 TTCGTTGCCGCCATTGTTAAACTTGCCGATCCGCGCGTGGCGCTCCGACTGGCGCGCCAG 2373
Query 2692 CAGGTCAATCTCTTTGAAGTC 2712
||||||||| |||||||| ||
Sbjct 2372 CAGGTCAATTTCTTTGAAATC 2352
Score = 273 bits (302), Expect = 4e-69
Identities = 514/749 (69%), Gaps = 20/749 (3%)
Strand=Plus/Minus
Query 4394 CTCGACCTGTGGGCGCGTTTTCAGGACTTCCAGCGCCGCATCCGCGACGCCATTGTCAAG 4453
|| |||||||||||||||| |||||| ||||||| || ||||| ||||||| || ||
Sbjct 780 CTGGACCTGTGGGCGCGTTATCAGGATTTCCAGCTGCGTATCCGTAACGCCATCGTGAAA 721
Query 4454 CGTCAGGCGCTCGATTTCATCATGGCCGGTTTTAACGGTACCACCCGCGCCGCCACCTCT 4513
||||||||||| || ||||||| ||| |||||||| | || || ||||||
Sbjct 720 CGTCAGGCGCTGGACCGCATCATGATCGGCTTTAACGGCGTGAAGCGTGCGAAAACCTCT 661
Query 4514 GACCGCACCAAAAATCCGATGCTGCAGGATGTTGCCGTCGGCTGGCTGCAGAAATACCGC 4573
|||| | | |||| ||| ||||||||||||| | ||||||||||||||| |||
Sbjct 660 AACCGTAGCGAAAACCCGCTGCTGCAGGATGTGAACAAAGGCTGGCTGCAGAAAATCCGT 601
Query 4574 AATGAAGCCCCGACGCGTGTGATGAGCAATATCACCGATGCTGACGGTAAGGTCGTTTCG 4633
| || || ||| | || ||| ||| | |||| | | |||| | | ||
Sbjct 600 GAGGATGCACCGGATCACGTCATGGGCAGCACCACCA---CGGGCGGTGAAACCACACCG 544
Query 4634 GCAGTGATTCGCGTCGGTCGAAACG--GCGACTATGAGAACCTCGACGCGCTGGTGATGG 4691
| | | | ||||| |||| | | || |||| ||||| ||||| |||||||||
Sbjct 543 GGTGCGGTGAAAGTCGG--GAAAGGTGGAGAATATGCCAACCTGGACGCCGTGGTGATGG 486
Query 4692 ATGCGACCAATAACCTGATTGACGAGGTTTATCAGGATGACCCGAAACTCGTTGCCATCG 4751
|||| |||| | || || |||| ||| || ||||| || | || || | ||
Sbjct 485 ATGCCGTCAATGAGCTTATCGACGTGGTCTACCAGGACGATGACGATCTGGTGGTGATTT 426
Query 4752 TTGGCCGTAAGCTGCTGGCCGACAAATATTTCCCGCTGGTGAACAAGCCGCAGGAAAACA 4811
||| ||| |||||||| | ||||| |||||||||||||| ||||| ||||||||||
Sbjct 425 GTGGTCGTGAGCTGCTGTCTGACAAGTATTTCCCGCTGGTCAACAAAGACCAGGAAAACA 366
Query 4812 GCGAGGCGCTCGCGGCAGATATCATCATCAGCCAGAAGCGAATCGGCAACCTGCCTGCTG 4871
| || || || || ||||| |||||||| ||||| || || || ||||| || |
Sbjct 365 GTGAAAAACTGGCTGCCGATATGATCATCAGTCAGAAACGCATGGGTGGCCTGCAGGCCG 306
Query 4872 TGCGTGTGCCGTACTTCCCGGCGAATGCCGTGTTAGTGACCACGCTGGAAAACCTCTCTA 4931
|||||| ||||| ||||||| ||||||| || | | ||| ||||| ||||| || |
Sbjct 305 TGCGTGCGCCGTTCTTCCCGCCGAATGCGCTGCTGATCACCCGTCTGGATAACCTGTCCA 246
Query 4932 TCTATTTCATGGATGAGAGCCACCGCCGCAGCATTGATGAAAACCCGAAAAAAGACTGCG 4991
| || | ||| || | || |||||| || || ||||||||| ||| |
Sbjct 245 TTTACTGGCAGGAGGACACCCGCCGCCGTTCGGTTATCGACAACCCGAAACGTGACCGGA 186
Query 4992 TGGAAAACTACGAGTCGATGAATATCGACTATGTGGTCGAGGCGTATGCCGCCG-GGTGC 5050
| ||||||| || || | || | ||||||||| |||| || |||| | | ||
Sbjct 185 TTGAAAACTTTGAATCCGTTAACGAAGCCTATGTGGTTGAGGACTA--CCGCTGCGCAGC 128
Query 5051 -CTGCTGGAAAACATCACCCTGGGCGATTTCACCGCACCTGCAGCACCGGAAAGCGGAGC 5109
||| ||||||||||| | || || |||| ||| | ||| ||| ||||||
Sbjct 127 ACTGGTGGAAAACATCCAGATTGGTGACTTCAGCGCCGCCGCA------GAAGCCGGAGC 74
Query 5110 CTAAACCATGA---CGAGCCCCGCACAGC 5135
||| |||||| ||| ||||||| ||
Sbjct 73 GTAACCCATGAGCCTGAGTCCCGCACGGC 45
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 95052137422576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |