Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq1 152 7e-32 seq16 89.7 7e-13 >seq1 Length=5851329 Score = 152 bits (168), Expect = 7e-32 Identities = 366/547 (67%), Gaps = 15/547 (3%) Strand=Plus/Plus Query 172399 AAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 172458 ||||||| || ||| ||||| || ||| || | ||| |||||| | ||| | Sbjct 5221440 AAGAACTGTTGTGGTTTATTTCGGGAAGCACTAATGCGAAAGAATTAAGCGCCCGAGGAG 5221499 Query 172459 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 172518 ||||| ||||| ||| ||||| | | |||||| | ||| || |||||||||| Sbjct 5221500 TTAAAATTTGGGATGCAAATGGAAGTAGGGAATTTCTCGATAGTCTAGGATTTACTGAAA 5221559 Query 172519 GAAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAAT 172578 || ||||||||||||||| || |||| || || |||||||||||| || ||| ||| Sbjct 5221560 GACCAGAAGGTGATTTAGGACCTGTTTACGGTTTCCAATGGAGACATTTTGGTGCTGAAT 5221619 Query 172579 AT-ATCGACTGTGATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATT 172637 || | || | |||| | || || |||||| ||||| | || ||| || | |||| Sbjct 5221620 ATGAGGGAGT-TGATGCCGACTATACAGGAAAAGGAATTGATCAACTAGCAGATGTTATT 5221678 Query 172638 AATACTTTACAAAACAACC---CAGAAAGTAGAAGGATGTTAATTGATAGTTGGAATGTA 172694 || || ||||||||| | ||| |||| || ||| || ||||||| | Sbjct 5221679 GATCAAATAAAAAACAACCCTTCTTCAAGAAGAATTATCTTATCTG---CTTGGAATCCA 5221735 Query 172695 CCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCATACTTTAGCACAATTTTATGTCAGa 172754 || | ||||||||||||||| | ||||| || ||||| | | ||||||||||| Sbjct 5221736 TCTGATCTTGATAAAATGGTTTTACCTCCATGTCATACACTTGTTCAATTTTATGT---T 5221792 Query 172755 aaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTA 172814 || | | ||| |||||| || |||||| | | |||| | || ||||| || Sbjct 5221793 CAAGATGGAGAGTTAAGTTGTCATTTGTATCAACGCAGTGGTGATGTCGGTTTGGGAGTT 5221852 Query 172815 CCTTATAATATTGGATTTTATTCATTTTTAA--TACTTGTGTTAAGTAAATGGTGCAATT 172872 || | ||| |||| | || ||| || | | || || | | || | ||| || Sbjct 5221853 CCATTTAACATTGCTTCATACTCACTTATGACCCACATGATTGCAAAAATTTGTGGAA-- 5221910 Query 172873 TAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATGTTG 172932 |||| | || | ||| |||| ||| |||| |||| ||| | ||| ||| ||||||| Sbjct 5221911 TAACAACTGGTGATTTTGTTCACACTATTGGCGATGCTCATATTTATAAAAACCATGTTG 5221970 Query 172933 AACCTTT 172939 | |||| Sbjct 5221971 ATGCTTT 5221977 Score = 86.0 bits (94), Expect = 8e-12 Identities = 99/130 (76%), Gaps = 4/130 (3%) Strand=Plus/Minus Query 166001 CATGGTGAACAAAATTT-ATG-TGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTA 166058 |||||||||||| ||| ||| ||| |||| || || || || || |||| |||||| Sbjct 3118276 CATGGTGAACAATCTTTGATGATGA--CTATTATCAATTTAGCTCAGGATTATGTTGGAT 3118219 Query 166059 CAAATAATATAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTA 166118 |||||||||| ||| | || ||||||||||||||| ||| | ||||||||| Sbjct 3118218 CAAATAATATTAACTTATTGTTGCCCATTGGTCAATTTGGTACTAGACTTCAAGGAGGTA 3118159 Query 166119 AAGATTCTGC 166128 |||||||||| Sbjct 3118158 AAGATTCTGC 3118149 >seq16 Length=715404 Score = 89.7 bits (98), Expect = 7e-13 Identities = 110/147 (75%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 166001 CATGGTGAACAAAATTT-ATG-TGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTA 166058 |||||||||||| ||| ||| ||| |||| || || || || || |||| |||||| Sbjct 673098 CATGGTGAACAATCTTTGATGATGA--CTATTATCAATTTAGCTCAGGATTATGTTGGAT 673041 Query 166059 CAAATAATATAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTA 166118 |||||||||| ||| | || ||||||||||||||| ||| | ||||||||| Sbjct 673040 CAAATAATATTAACTTATTGTTGCCCATTGGTCAATTTGGTACTAGACTTCAAGGAGGTA 672981 Query 166119 AAGATTCTGCTGCATCAAGATATATTT 166145 ||||||||||| | | | ||||||| Sbjct 672980 AAGATTCTGCTTCGCCTCGTTATATTT 672954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632484959107560