Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4 134 1e-26 seq233 123 2e-23 seq1 98.7 9e-16 >seq4 Length=2360143 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || ||||| || || || || ||||| | | Sbjct 1036153 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036212 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || |||||| ||||||||||| ||||| || || || ||| Sbjct 1036213 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCAA 1036272 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || ||||| ||||| ||||| || |||||| |||| | || |||||||| Sbjct 1036273 CAAAGATTAATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAAT 1036332 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || |||||||| | || | || ||||| Sbjct 1036333 ATTCAAAAGGAGTCAACCCTTCACTTGGTTCTTCGTCTTCGTGGAGG 1036379 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || ||||| || || || || ||||| | | Sbjct 1035925 ATGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035984 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || |||||| |||||||| |||||||| || || || ||| Sbjct 1035985 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAA 1036044 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || ||||| || || ||||| || |||||| |||| | || |||||||| Sbjct 1036045 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAAT 1036104 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || |||||||| | || | || ||||| Sbjct 1036105 ATTCAAAAGGAGTCAACCCTTCACTTGGTTCTTCGTCTTCGTGGAGG 1036151 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || ||| |||| || | || || ||||| || || || || ||||| | Sbjct 1035466 ACCATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCT 1035525 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || ||| | || | || || |||||| |||||||| || ||||| || || || Sbjct 1035526 TCTGATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGAC 1035585 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 |||||| | || ||||| || || ||||| || |||||| |||| | || |||||| Sbjct 1035586 CAACAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTAT 1035645 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||||||||| || || || |||||||| | || | || ||||| Sbjct 1035646 AATATTCAAAAGGAGTCAACCCTTCACTTGGTTCTTCGTCTCCGTGGAGG 1035695 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || ||||| || || || || ||||| | | Sbjct 1036381 ATGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036440 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || |||||| ||||| || |||||||| || || || ||| Sbjct 1036441 GATACAATTGACAATGTCAAGTCAAAGATTCAAGATAAGGAAGGAATCCCACCAGACCAA 1036500 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||| ||||| ||||| || |||||| |||| | || ||||| ||| Sbjct 1036501 CAAAGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAAC 1036560 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| || || || || ||||| || | || | || ||||| Sbjct 1036561 ATCCAAAAAGAGTCAACCCTTCACTTAGTTCTTCGTCTCCGTGGAGG 1036607 >seq233 Length=3140 Score = 123 bits (136), Expect = 2e-23 Identities = 365/555 (66%), Gaps = 17/555 (3%) Strand=Plus/Plus Query 139060 TCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCG 139119 || |||||| | || | | ||| || ||| || || || || ||||| || || Sbjct 1743 TCAACAAATCTATTAAGAGCAATAGACCCTAGATTACATACAGCAACTTCATCTGGTGAA 1802 Query 139120 CTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGA 139179 | ||||| ||||| || | ||| | |||| ||||||||| || || | |||||||||| Sbjct 1803 CAATATTCAACAATCTCAGTACAGAGATTAGAACACTTGATAGTTCCAAGATTTTGTTGA 1862 Query 139180 TTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGT 139239 || ||||| || |||||| |||||| |||| ||| || |||||||| ||||| | || Sbjct 1863 TTACTTTTCCGATTACAATGATCTTTATAAACCATGTAAGGTGTGCCTGTTTCTATCTGG 1922 Query 139240 GTCTCTATAATGAATTTGAACAAGT--CCCTAGCTTGTATTTGACGCACGTAAAGTTCGT 139297 |||| ||| ||| ||| | | || |||| ||||| |||| ||| | Sbjct 1923 CTCTCACAAAT--CTTTTGCCAAATAACTCTTGCTTTAATTTGCTTTCTGTAACGTTTCT 1980 Query 139298 CGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGC 139357 | ||| || || ||| | || |||||| ||||| | || ||| | Sbjct 1981 CCTCCTCATATTTAATGTATAATTTCTCGAATTCATCACCCCAACAATCTTCAAGTCCAG 2040 Query 139358 GACACTTGTCAGGACACATGAGCGACCA-TACG--CCGTTCGCCTTGACGCGCCTCATGA 139414 |||| | | ||||||||| | |||||| || | | || || || || |||||| Sbjct 2041 GACATTCATGAGGACACATTAACGACCAGTAAGAATCTTT---CTCAACACGTTTCATGA 2097 Query 139415 ACAGATCCGGAATCCACAAAGCGAACAG--CAAATCGCGCGCCTTCTTATCTTCCGAACC 139472 | | ||| |||| | |||||| | || |||||| || || | | ||||| | ||| Sbjct 2098 ATAAATCAGGAA--CCCAAAGCCCATAGAACAAATCTCGTGCTCTTTCCTCTTCTGGACC 2155 Query 139473 CATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGAT 139532 |||| || | || || || || | | ||||| ||||||||||| | ||| || Sbjct 2156 TGTGTTCTTCTTAAGGTCCAGAAATTCCATGATATCAGCATGCCATGGTTCTAAATATAT 2215 Query 139533 GGCCATTGCGCCTTTCCGT---TTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAA 139589 || | ||| || || | || |||||||| || || | ||| | | |||||| || Sbjct 2216 TGCAAATGCTCCGGGCCTTTTATTACCACCTTGGTCAACATAACGTGCCGTATTATTAAA 2275 Query 139590 TACGCGCAACATCGG 139604 || | |||||| || Sbjct 2276 AACTCTCAACATTGG 2290 >seq1 Length=5851329 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || ||||| ||||| || || ||||| || |||| | Sbjct 5400306 ATGCAAATTTTCGTTAAGACTCTTACTGGTAAGACTATCACTCTTGAAGTCGA-GCCATC 5400364 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| |||||| || |||||||||||||||||||| || || || || Sbjct 5400365 AGATACCATCGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGAATCCCACCAGACCA 5400424 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||||||| | || |||||||| Sbjct 5400425 ACAACGTCTTATTTTTGCCGG 5400445 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 139129 ACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTT 139188 |||||||| ||||| | ||| |||||| || || ||||||||||||||||| ||||| Sbjct 2654629 ACAATTTCAGCACAAAGATTTGAACACTTTATTGTTCCTAAATTTTGTTGATTACTTTTA 2654570 Query 139189 CGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 || |||||| || |||||||||||||| || | || ||||| Sbjct 2654569 CGATTACAATGGTCCTTGTAAAGCATATATGGAATACCCGTTTC 2654526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894298876360