Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq22 105 6e-18 seq4 93.3 3e-14 >seq22 Length=599982 Score = 105 bits (116), Expect = 6e-18 Identities = 216/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 ||||| || || ||||| | ||| | |||||||| | |||||||||||||| || Sbjct 538542 GTCTCTGGATTATCACAACTGGCACAAAGAACAAACTTTCTAATGAAACCATCAAGAAGA 538483 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT-TTTGTAATC 34439 | |||||| || | || || || || || ||| | || || || ||||| ||| Sbjct 538482 TTCTGTAATTTTGTTGCATCATGATCACCATTAACAATGTAACGGTCATTCTTTGT-ATC 538424 Query 34440 GACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACG 34499 | | ||||| || || | || || || || |||||||| || || || | ||| | Sbjct 538423 AAAATTGGTTTGAGCTCCTAATTCACAACCAAAATACTTTGTTGGATACATTGGCGGTCT 538364 Query 34500 TCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTT 34559 | || ||||| || ||||| ||| || | ||||| |||||||| || || || || Sbjct 538363 CTCTAGAGCCTTAGCAATTTCAACCATATTAGCTATGACTGTCTTGATCCCATTACCTTT 538304 Query 34560 TCCTTCGACCTTGGCGCAGATGC-GCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACAT 34618 ||||| || || || || || |||||| ||||| |||||| | | ||| | |||| Sbjct 538303 ACCTTCAACTTTTGC-TTGAAGCTTCGGCATCTTGTAACGGTAGTATGGATCCACTACAT 538245 Query 34619 TGCGGTTAACGTTCAC 34634 | || || || || || Sbjct 538244 TACGATTGACATTAAC 538229 >seq4 Length=2360143 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| ||||| || ||||||||||| || | || |||||| Sbjct 1036609 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036668 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || |||||| ||||| || || | || || ||| Sbjct 1036669 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1036728 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | || || ||||| || ||||||| ||||| | | ||||||||| Sbjct 1036729 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAAC 1036788 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || |||||||| || || | ||| |||| Sbjct 1036789 ATCCAAAAAGAGTCAACCCTTCACTTGGT 1036817 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||||| || ||||||||||| || | || |||||| Sbjct 1035697 ATGCAGATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035756 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || |||||| ||||| || || | || || ||| Sbjct 1035757 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1035816 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | || || ||||| || ||||||| ||||| | | ||||||||| Sbjct 1035817 CAAAGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTACAAC 1035876 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || |||||||| || || | ||| |||| Sbjct 1035877 ATCCAAAAAGAGTCAACCCTTCACTTGGT 1035905 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| ||||| || ||||||||||| || | || |||||| Sbjct 1036153 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036212 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || |||||| |||||||| || | || || ||| Sbjct 1036213 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCAA 1036272 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | || || ||||| || ||||||| ||||| | | ||||| || Sbjct 1036273 CAAAGATTAATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAAT 1036332 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||| || || || | ||| |||| Sbjct 1036333 ATTCAAAAGGAGTCAACCCTTCACTTGGT 1036361 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||||| || ||||||||||| || | || |||||| Sbjct 1036381 ATGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036440 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || |||||| || || ||||| | || || ||| Sbjct 1036441 GATACAATTGACAATGTCAAGTCAAAGATTCAAGATAAGGAAGGAATCCCACCAGACCAA 1036500 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | || || ||||| || ||||||| ||||| | | ||||||||| Sbjct 1036501 CAAAGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAAC 1036560 Query 110453 ATTCAAAAAGAATCTAC 110469 || |||||||| || || Sbjct 1036561 ATCCAAAAAGAGTCAAC 1036577 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||||| || ||||||||||| || | || |||||| Sbjct 1035469 ATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035528 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || |||||| ||||| || || | || || ||| Sbjct 1035529 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1035588 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | || || ||||| || ||||||| ||||| | | ||||| || Sbjct 1035589 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTATAAT 1035648 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||| || || || | ||| |||| Sbjct 1035649 ATTCAAAAGGAGTCAACCCTTCACTTGGT 1035677 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||||| || ||||||||||| || | || |||||| Sbjct 1035925 ATGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035984 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || |||||| ||||| ||||| | || || ||| Sbjct 1035985 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAA 1036044 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | || || ||||| || ||||||| ||||| | | ||||| || Sbjct 1036045 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAAT 1036104 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||| || || || | ||| |||| Sbjct 1036105 ATTCAAAAGGAGTCAACCCTTCACTTGGT 1036133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412838646505391