Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq220 453 2e-123 >seq220 Length=3625 Score = 453 bits (502), Expect = 2e-123 Identities = 887/1296 (68%), Gaps = 41/1296 (3%) Strand=Plus/Minus Query 1519 CGGCGGGATAGAACGAGCGCACGAGCTGGAACACACCGACACCGAGGCCGGTGGCATCAA 1578 |||| ||| | |||| |||| || | | || ||| ||| | |||||| | || | Sbjct 3594 CGGCAGGAAAAAACGCTTTCACGTTCTCGTAAACCCCGTGACCAACGCCGGTCGAGTCGA 3535 Query 1579 TCCCGATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCTGCCTGGGTGG 1638 | ||||| || |||||||| | |||||| ||||| ||||| || ||||||| | Sbjct 3534 TGCCGATATAGGTCACGTTGTACTGTTCGGTCAGTTTTTTGATGGCGTCAGCCTGGGCGC 3475 Query 1639 CAAAGTCCATGCCTTTCCACTGGTGACGTTCAAGGATCCTGAATTTGCCACCGGCCACCA 1698 |||||||| || |||||||||||| ||||| || | ||| || || || | ||| Sbjct 3474 GGAAGTCCATCCCGCGCCACTGGTGACGCTCAAGAATGCGGAACTTACCGCCCGGCACGG 3415 Query 1699 CCGGCGGTGCCAGCACCACGCATCCGGCGCTGTCGCC---------ACGGTGTGACGGGT 1749 | |||||||||| |||||||||||||||||||||||| || | | ||||| Sbjct 3414 CTGGCGGTGCCACCACCACGCATCCGGCGCTGTCGCCGTTTTGCGTACCTTTCGCCGGGT 3355 Query 1750 CGTAACCAATCCATACCGGGCGGGAGCCGAACGGATTTGCGGCAAA--CGGCGCAT---A 1804 | ||||| ||||| || ||| |||| ||||| || ||| | | | |||| | Sbjct 3354 CATAACCGATCCACACTTCGCGCCAGCCAAACGG----GC-GCAGAGCCAGTGCATGAAA 3300 Query 1805 GTCTTCCCATTCTT-CCAGCGTGTCGACCATACAGCGTTGCAGCTCCTCGAACGGGAACA 1863 ||| ||| ||| ||||| |||| ||||| || |||||||| || |||||| | Sbjct 3299 GTCGGTCCAGACTTCCCAGC-TGTCCACCATGCACGCCTGCAGCTCGCTGAGCGGGAATA 3241 Query 1864 CCGACGCCTTGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGT 1923 | ||||| ||||| ||||| || ||||| | |||||| | | ||| | | ||||| Sbjct 3240 CGGACGCGAGATCGTCCACAAACTCGCACATCAGCAGGTTCTGGTATTCGGCCGGGCTGT 3181 Query 1924 TTTCGCGTTTG-AGCTGCTCAATGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCA 1982 || | | | | ||| |||| |||||| || | || ||||| || || || || Sbjct 3180 ACTC-CATGCGCAACTGGTCAAGGTCGAAAAGGTTACATCCGCCGCGCACTGCATCTTCC 3122 Query 1983 ATGGTGACAATCTGCCGCCACTGGCCGTCCGCACAGAGAAGCCCACCGGCAAGGGCGTTA 2042 | |||||| ||||| || | || ||||| || || || || || ||| || | | Sbjct 3121 ACGGTGACTATCTGGCGGTATTGCCCGTCTGCGCACAGCAGGCCGGGGGCCAGATTGCTG 3062 Query 2043 TGACTGACGTCGATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCA 2102 || | |||||| ||||| | |||| || ||| || ||||||||||| || Sbjct 3061 TGGGACAGGTCGATGTCCAC---CTTATCGGCTTTGTTGCGCCCACGGTTGAACAGCGCA 3005 Query 2103 CCCGACCAGAACGGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAT 2162 || ||||||||||| || || ||| | ||| |||| || ||||| |||||||| | Sbjct 3004 CCGGACCAGAACGGATAAGCACTGTGGGTCAGGCTGGATGGCGTGGAAAAATAGGTTTGT 2945 Query 2163 CGCAGGTGACTCTGTGA--GGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCG 2220 ||| | | ||||| |||||||| || ||||| || |||||| |||| || |||| Sbjct 2944 CGCCATT--TTTTGTGAATAGCCATACCGGAAGCCACTTTGCGCAGTTCCTGGAATTTCG 2887 Query 2221 GGATCCAGAAAATCTCATCGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGT 2280 | ||||||||| |||||| | ||||| | |||| | | |||||| |||||| || | Sbjct 2886 GTATCCAGAAATACTCATCCAGATACAGATTGCCGGTGTAGCTCTGGGCGGTGCGGGCAT 2827 Query 2281 TGGTGCCGAGAAAAATCAGTTTTGCACCGTTATTGCCCAGGACAATCGGGTCACCGGTCA 2340 |||||||||| || || | || |||||| || || ||||| || || ||| Sbjct 2826 TGGTGCCGAGGAAGTAAAGCGTGGCTCCGTTA---GGAAGCACCATCGGATCGCCTTTCA 2770 Query 2341 GGTCAACGTCAACCAGCCGGGCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGCG 2400 | || || || || ||| ||| |||||||||| | || || | ||||| | Sbjct 2769 GCTCCACCTCGACTTCTTTGGCGAAGTCGATGATGTACTGCTTAAAAACGTGAGCCTGTG 2710 Query 2401 TTTTACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCT 2460 |||||||| || || |||||||||||| | ||||| ||||||| | ||| || | Sbjct 2709 CCTTACTGGCAGAAAGGAAAATCTGGTTACGTCCGGTAAGCAGGGCGTCAATCAGGGCTT 2650 Query 2461 CGCGGGAAAAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGAATATCGCGGATGCGGT 2520 | |||| ||| ||||| |||||||| |||||||| || ||||| | | ||||||||||| Sbjct 2649 CACGGGCAAAGTAAAAGGTCGCGCCGATCTGGCGTGACTTCAGCAGGTTGCGGATGCGGT 2590 Query 2521 GCTCAAGCCCGGCGCGATACCAGTGCAACTGATATTCGAAAGACTGCTCAA-AGAAAATC 2579 ||||| ||||||| ||| || | | || | | || ||||||| Sbjct 2589 TGGTTTTTCCGGCTTCCCACCAGTGGCGCTGGTAGTTG-AACATGGAGGAATGGAAAATC 2531 Query 2580 TGCTCCAGCTTTTCGATGGCCTCGTCACTGAAAAAATTCTTTTTCGGTTTGCGACGCCCG 2639 | |||||||| || || || || |||| | |||||||| ||||| || ||| | Sbjct 2530 TCTTCCAGCTTCTCAATCTGTTCATCGGTGAAGACATTCTTTTCCGGTTGACGGCGCGGG 2471 Query 2640 CCTTTGTTGCGGTTAGCGACGTTCGGATTAAGGTCTGCCTCGTTGCCG---GTCTGACTG 2696 |||||||||||||| |||||||| || || | ||| || ||||||||| | | | Sbjct 2470 CCTTTGTTGCGGTTGGCGACGTTAGGGTTTAAGTCGGCTTCGTTGCCGCCATTGTTAAAC 2411 Query 2697 TAGCGGTTTACCCGTGCCAGTCGTTCAATCTGGCGTCCGAGCAGGTCAATTTCCTTGAAG 2756 | || | | ||| || | || || |||||| | |||||||||||||| ||||| Sbjct 2410 TTGCCG---ATCCGCGCGTGGCGCTCCGACTGGCGCGCCAGCAGGTCAATTTCTTTGAAA 2354 Query 2757 TCACCGCCGGTTTTCTGCGGTTTGATGATGAGCTGG 2792 || || ||| ||| || || ||||||||| Sbjct 2353 TCTTTCCCTTCTTTGTGCTCCTTCATAATGAGCTGG 2318 Score = 358 bits (396), Expect = 1e-94 Identities = 536/757 (71%), Gaps = 28/757 (4%) Strand=Plus/Minus Query 4429 GCTTGACCTGTGGGCGCGTTATCAGGATTTCCAGCTCCGTGTCCGTAACGCCATTATCAA 4488 ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| | || Sbjct 781 GCTGGACCTGTGGGCGCGTTATCAGGATTTCCAGCTGCGTATCCGTAACGCCATCGTGAA 722 Query 4489 ACGCCAGTCCCTTGATTTAATCATGGCCGGTTTTAACGGCGTGAGGCGTGCCGAAACCTC 4548 ||| ||| | || || |||||| ||| ||||||||||||| |||||| ||||||| Sbjct 721 ACGTCAGGCGCTGGACCGCATCATGATCGGCTTTAACGGCGTGAAGCGTGCGAAAACCTC 662 Query 4549 TGACCGCAGCAGTAATCCGATGCTACAGGATGTGGCGGTCGGCTGGCTGCAGAAATACCG 4608 | |||| ||| || ||| |||| ||||||||| ||||||||||||||| ||| Sbjct 661 TAACCGTAGCGAAAACCCGCTGCTGCAGGATGTGAACAAAGGCTGGCTGCAGAAAATCCG 602 Query 4609 CAATGAAGCACCGGCGCGCGTGATGAGCAAGGTCACTGACGAGGAAGGGCACACCACCTC 4668 | || ||||||| | ||| ||| ||| ||| ||| | || | ||||| | Sbjct 601 TGAGGATGCACCGGATCACGTCATGGGCAGCACCACC-ACGGGC--GGTGAAACCACACC 545 Query 4669 ---TGAGGTTATCCGCGTGGGTAAGGGCGGTGATTATGCCAGCCTTGACGCACTGGTGAT 4725 || ||| | || || || || || || ||||||| ||| ||||| ||||||| Sbjct 544 GGGTGCGGTGAAA---GTCGGGAAAGGTGGAGAATATGCCAACCTGGACGCCGTGGTGAT 488 Query 4726 GGATGCGACCAACAACCTGATTGAGCCGTGGTAT--CAGGAAGACCCTGACCTTGTGGTG 4783 |||||| ||| | || || || |||||| | ||||| || || || |||||| Sbjct 487 GGATGCCGTCAATGAGCTTATCGA--CGTGGTCTACCAGGACGATGACGATCTGGTGGTG 430 Query 4784 ATTGTGGGGCGTCAGCTACTGGCGGACAAGTATTTCCCCATCGTTAACAAGGAGCAGGAC 4843 ||| || ||| |||| ||| | |||||||||||||| | || ||||| || ||||| Sbjct 429 ATTTGTGGTCGTGAGCTGCTGTCTGACAAGTATTTCCCGCTGGTCAACAAAGACCAGGAA 370 Query 4844 AACAGCGAGATGCTGGCCGCTGACGTCATCATCAGCCAGAAACGCATCGGTAACCTGCCG 4903 ||||| || | ||||| || || | |||||||| ||||||||||| ||| ||||| | Sbjct 369 AACAGTGAAAAACTGGCTGCCGATATGATCATCAGTCAGAAACGCATGGGTGGCCTGCAG 310 Query 4904 GCGGTACGCGTCCCGTACTTCCCGGCGGATGCGATGCTCATCACGAAGCTGGAAAACCTG 4963 || || || | |||| ||||||| || ||||| |||| ||||| ||||| |||||| Sbjct 309 GCCGTGCGTGCGCCGTTCTTCCCGCCGAATGCGCTGCTGATCACCCGTCTGGATAACCTG 250 Query 4964 TCCATCTACTACATGGATGACAGCCATCGCCGCGTGATTGAGGAAAACCCGAAACTCGAC 5023 ||||| |||| ||| |||| || ||||| | || || |||||||||| ||| Sbjct 249 TCCATTTACTGGCAGGAGGACACCCGCCGCCGTTCGGTTATCGACAACCCGAAACGTGAC 190 Query 5024 CGCGTGGAGAACTACGAGTCAATGAACATTGATTACGTGGTGGAAGACTACGCCGCCGGT 5083 || | || |||| || || | ||| | || ||||| || |||||| | || Sbjct 189 CGGATTGAAAACTTTGAATCCGTTAACGAAGCCTATGTGGTTGAGGACTACCGCTGCGCA 130 Query 5084 TGTCTGGTGGAAAAAATTAAGGTCGGTGATTTCTCCACACCGGCTAAGGCGACCGCAGAG 5143 ||||||||||| || || | ||||| ||| | || ||||||| Sbjct 129 GCACTGGTGGAAAACATCCAGATTGGTGACTTC------------AGCGCCGCCGCAGAA 82 Query 5144 CCGGGAGCGTAACCGATGA---CGAGTCCCGCACAGC 5177 | ||||||||||| |||| ||||||||||| || Sbjct 81 GCCGGAGCGTAACCCATGAGCCTGAGTCCCGCACGGC 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107487250741460