Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1 105 1e-17 seq4 96.9 5e-15 >seq1 Length=5851329 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| ||||||| ||||| ||||||||||| ||| |||| || || || Sbjct 5040551 TGCAAATTTTCGTAAAAACTTTAACTGGAAAAACAATAACTCTTGAGGTTGAGGCCTCCG 5040610 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||| || | ||||| || | ||| || || |||||||| |||||||| || |||| Sbjct 5040611 ATACTGTTGATAATGTTAAGACTAAGATCCATGAAAAAGAAGGTATTCCACCAGACCAAC 5040670 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 || | || |||||||| |||| Sbjct 5040671 AACGGCTTATTTTTGCCGGTA 5040691 Score = 87.8 bits (96), Expect = 3e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | || || | || || || || || ||| |||| || || | || | Sbjct 5400307 TGCAAATTTTCGTTAAGACTCTTACTGGTAAGACTATCACTCTTGAAGTCGAGCCATCA- 5400365 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| || ||||||||||| |||||| ||| |||||||| || ||||| || ||| Sbjct 5400366 GATACCATCGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGAATCCCACCAGACCAA 5400425 Query 146151 CAAAGACTCATTTTTGCAGGTA 146172 ||| | || |||||||| |||| Sbjct 5400426 CAACGTCTTATTTTTGCCGGTA 5400447 >seq4 Length=2360143 Score = 96.9 bits (106), Expect = 5e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || ||||| ||||| || ||| |||| ||||| | | | Sbjct 1035926 TGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCTG 1035985 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || || || || || ||| || ||||| || ||||| || |||| Sbjct 1035986 ATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAAC 1036045 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || || |||||| | || ||| ||||| | | |||||||||| Sbjct 1036046 AAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAATA 1036105 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| || || || Sbjct 1036106 TTCAAAAGGAGTCAAC 1036121 Score = 96.9 bits (106), Expect = 5e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || ||||| ||||| || ||| |||| ||||| | | | Sbjct 1036154 TGCAGATCTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCTG 1036213 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || || || || || ||| ||||| || |||||||| || |||| Sbjct 1036214 ATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCAAC 1036273 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || || |||||| | || ||| ||||| | | |||||||||| Sbjct 1036274 AAAGATTAATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAATA 1036333 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| || || || Sbjct 1036334 TTCAAAAGGAGTCAAC 1036349 Score = 93.3 bits (102), Expect = 7e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || ||||| ||||| || ||| |||| ||||| | | | Sbjct 1035470 TGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCTG 1035529 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || || || || || ||| || || || || ||||| || |||| Sbjct 1035530 ATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAAC 1035589 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || || |||||| | || ||| ||||| | | |||||||||| Sbjct 1035590 AAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTATAATA 1035649 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| || || || Sbjct 1035650 TTCAAAAGGAGTCAAC 1035665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786160631504040