Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq220 232 1e-56 >seq220 Length=3625 Score = 232 bits (256), Expect = 1e-56 Identities = 789/1216 (65%), Gaps = 44/1216 (4%) Strand=Plus/Minus Query 3170 GCCGGTCGCATCCACGCCGATGTAGGTCACCCAATAGCGCTTGGTGATCTGCTCGATGAA 3229 |||||||| || | |||||| |||||||| || | | ||| | | | |||| Sbjct 3548 GCCGGTCGAGTCGATGCCGATATAGGTCACGTTGTACTGTTCGGTCAGTTTTTTGATGGC 3489 Query 3230 CGCGGCCTGGTCCTTGAACTCCATGCCCTTGAACTGATGGCGTTCCAGCACGCGGAACTT 3289 | |||||| | ||| ||||| || |||| || || || || | ||||||||| Sbjct 3488 GTCAGCCTGGGCGCGGAAGTCCATCCCGCGCCACTGGTGACGCTCAAGAATGCGGAACTT 3429 Query 3290 GCCGCAGGGCACCAGCGGCGGGGCTACCACCACGATGCCCGCGCTGTCGCCGGTCT-CG- 3347 |||| ||||| ||||| || ||||||||| || |||||||||||| | | || Sbjct 3428 ACCGCCCGGCACGGCTGGCGGTGCCACCACCACGCATCCGGCGCTGTCGCCGTTTTGCGT 3369 Query 3348 -------GCCGGGTCGTAGCCGATCCACACAGCGCGGTCGCCGTAGGGCCGGACGGCAAA 3400 |||||||| || ||||||||||| |||| ||| | || || | || | Sbjct 3368 ACCTTTCGCCGGGTCATAACCGATCCACACTTCGCGCCAGCCAAACGGGCGCAGAGCCAG 3309 Query 3401 CGGCTTGTAGTCGTCCGCCCACTCGACCCAGCTATCGACCTGACAGGGCTGCAGCATCG- 3459 | | ||||| | ||| | ||||||| || ||| || | ||||||| ||| Sbjct 3308 TGCATGAAAGTCG---GTCCAGACTTCCCAGCTGTCCACCATGCACGCCTGCAGC-TCGC 3253 Query 3460 TGAGCGGGAATACGCTGGCGCTGTCATCCACGAACTCGCACATCAGCAGATTGGCGAATT 3519 |||||||||||||| ||| || ||||| ||||||||||||||||| || | ||| Sbjct 3252 TGAGCGGGAATACGGACGCGAGATCGTCCACAAACTCGCACATCAGCAGGTTCTGGTATT 3193 Query 3520 CCTCGGCGCTGTAGTCGCGGCGCAGTTCCTCGATATCGAACAGGTCACAGCCACGGCCGG 3579 | | | |||||| || ||||| | || | ||||| |||| ||| || | || Sbjct 3192 CGGCCGGGCTGTACTCCATGCGCAACTGGTCAAGGTCGAAAAGGTTACATCCGCCGCGCA 3133 Query 3580 CCGCATCAAGAACGGTCACGATCTGGCGCCAGATCGCGTCCTCGCAACGCCGGCCACCCA 3639 | ||||| ||||| || |||||||| | | |||| |||| || |||| Sbjct 3132 CTGCATCTTCCACGGTGACTATCTGGCGGTATTGCCCGTCTGCGCACAGCAGGCCGGGGG 3073 Query 3640 TCAGGCGCGCGTGGCTCACATCCAGCTGGATCTGCTGGGACACCGAGCGTCCCTTGTTGA 3699 ||| |||| || || | | | || | || ||| || ||||| Sbjct 3072 CCAGATTGCTGTGGGACAGGTCGATGTCCACCTTATCGGCTTTGTTGCGCCCACGGTTGA 3013 Query 3700 AGCGCTCGCCGGTCCAGAAGTCGAAGGCTTCATGCGCCATGGTGGACGGCGTGCTGAAGT 3759 | || | |||| |||||| | || || | || | |||| |||||| || | Sbjct 3012 ACAGCGCACCGGACCAGAACGGATAAGCACTGTGGGTCAGGCTGGATGGCGTGGAAAAAT 2953 Query 3760 AGGTCTTGCGCCACTTCTTGTGCATCGCCATGCCGCTGGCGACCTTGTTCAGCTGGTTGA 3819 |||| | ||||| || ||||| || ||||| ||| || || ||| ||| | | || Sbjct 2952 AGGTTTGTCGCCATTTTTTGTGAATAGCCATACCGGAAGCCACTTTGCGCAGTTCCTGGA 2893 Query 3820 A--ACCGTAGGTCCAGAAGAACTCGTCAAAGTAGAAATTGCCGTGGTAGCCCTGTGCGGT 3877 | | ||| ||||||| |||| || | || | ||||||| ||||| ||| ||||| Sbjct 2892 ATTTCGGTA--TCCAGAAATACTCATCCAGATACAGATTGCCGGTGTAGCTCTGGGCGGT 2835 Query 3878 GCGGGCGTTGGTGCCCAGGAAGAACAGCTCGGCGCCATTGGCCAGGGTGATCGGGTCGCC 3937 |||||| |||||||| |||||| | ||| ||| || || | || ||||| ||||| Sbjct 2834 GCGGGCATTGGTGCCGAGGAAGTAAAGCGTGGCTCCGTTAGGAAGCACCATCGGATCGCC 2775 Query 3938 GGTCAGGTCACGGTCCAGCACCTCACGCACGAAGCCCCGCATATA--GCCGAGGAAGATG 3995 |||| || || || || ||||| | || || || | || | | Sbjct 2774 TTTCAGCTC---CACCTCGACTTCTTTGGCGAAGTCGATGATGTACTGCTTA--AAAACG 2720 Query 3996 TGCGCTTGGCTCTTGGATGCGCTCAGGAAAATCTGGTTGCGGCCGGTGGTCAGCGCGTCG 4055 || || || ||| || |||||||||||||| || ||||| ||| ||||| Sbjct 2719 TGAGCCTGTGCCTTACTGGCAGAAAGGAAAATCTGGTTACGTCCGGTAAGCAGGGCGTCA 2660 Query 4056 ATCAGCGCCTCGCGGGCGAAGTAGTAGGTGGCACCGATCTGGCGCGACTTCAGGATGATG 4115 ||||| || || ||||| ||||| |||| || ||||||||||| |||||||| | | || Sbjct 2659 ATCAGGGCTTCACGGGCAAAGTAAAAGGTCGCGCCGATCTGGCGTGACTTCAGCAGGTTG 2600 Query 4116 CGCGTGCGTTCG---TTGCCCGCCCGGTACCAATCGCGCTGGTAGTCGAAACAGCCATCC 4172 || |||| | | || || || |||| | ||||||||||| ||| ||| Sbjct 2599 CGGATGCGGTTGGTTTTTCCGGCTTCCCACCAGTGGCGCTGGTAGTTGAA-----CATGG 2545 Query 4173 ACGAACG-----CCGTCTGCAGGCGCTCGATCTCTTCCTCGCTGAACTCGTTCTTGCGCG 4227 | ||| | | | ||| ||| |||| ||| ||| |||| | ||||| || Sbjct 2544 AGGAATGGAAAATCTCTTCCAGCTTCTCAATCTGTTCATCGGTGAAGACATTCTTTTCCG 2485 Query 4228 CCT-TCTTCTTGGGCGCTGCGTTGCGGTTGGCCACCGCCGGATTGAGGTCAGCCTCGTTG 4286 | | | |||| || |||||||||||| || || || | ||| || |||||| Sbjct 2484 GTTGACGGCGCGGGC-CTTTGTTGCGGTTGGCGACGTTAGGGTTTAAGTCGGCTTCGTTG 2426 Query 4287 CCACCGCCCTGGTACCGTTG--AATGCGCGCCTGCCGTTCCAACTGGCGGTGCAGCAGAT 4344 || | | || || ||| || ||||| || || ||| ||||||| |||||| | Sbjct 2425 CCGC--CATTGTTAAACTTGCCGATCCGCGCGTGGCGCTCCGACTGGCGCGCCAGCAGGT 2368 Query 4345 CAATCTCTTTGAAGTC 4360 |||| |||||||| || Sbjct 2367 CAATTTCTTTGAAATC 2352 Score = 141 bits (156), Expect = 2e-29 Identities = 613/952 (64%), Gaps = 37/952 (4%) Strand=Plus/Minus Query 5715 TGGCCAACACCTTCTCTGTCGAGCCGACTGTGCAGCAGAGCCTCGAAGCCCGCATGCAGG 5774 || ||| || ||| |||| |||||| |||||||||||| || |||| || || ||| Sbjct 1046 TGTCCAGCAAGTTCACTGTAGAGCCGTCTGTGCAGCAGACGCTGGAAGACCAGATCCAGC 987 Query 5775 AAAGCAGTACCTTCCTGCAGGCGATCAACATGGTCGGC-GTGAACGAACTGAAGGGCCAG 5833 | | | |||||| | ||| ||| | || | |||| || | | || ||| Sbjct 986 AGTCCGCCGCTTTCCTGACGCTGATTAACGTCA-CGCCAGTGACTGAGCAGTCCGGTCAG 928 Query 5834 AAGGTTGGCGTTGGCATCACCGGCACCATTGCCGGCCGCACCGACACCAGCGGCAACGGC 5893 | | || | || | | ||||||||||||| ||| ||||||| || || | Sbjct 927 CTGCTGGGGCTGGGGGTTGGCAGCACCATTGCCGGAACCACTGACACCACCGCGAAAG-- 870 Query 5894 GAGCGCAATCCGTCCGATCCGACCTCGCTGGT----GTCCAACACCTACGAGTGCCAGAA 5949 |||| | || ||||||||| | |||| || || ||| | ||| | | Sbjct 869 -AGCGTGAACCTGTCGATCCGACGCTGATGGTCGATGTGGAA----TACAAATGCGAACA 815 Query 5950 GACCGACTTTGACACCGCCCTGCCCTATGCCCGCCTGGACGCCTGGGCGCATCGCCCCGA 6009 |||| ||||||| || | ||| |||| || |||||| ||||||| | | || Sbjct 814 GACCAACTTTGATACGGTGCTGACCTACGCGAAGCTGGACCTGTGGGCGCGTTATCAGGA 755 Query 6010 GTTCCAGACCCTGATCCGCGACGCGATCATCCAGCGCCAGGCACTGGACCGGATCATGAT 6069 |||||| | ||||| |||| ||| | | || ||||| |||||||| |||||||| Sbjct 754 TTTCCAGCTGCGTATCCGTAACGCCATCGTGAAACGTCAGGCGCTGGACCGCATCATGAT 695 Query 6070 CGGCTGGCACGGCACCAGCATTGCCATCAACACCGACCGCGTCGCCAATCCGATGCTGCA 6129 ||||| ||||| | ||| | | | | |||| || || ||| ||||||| Sbjct 694 CGGCTTTAACGGCGTGAAGCGTGCGAAAACCTCTAACCGTAGCGAAAACCCGCTGCTGCA 635 Query 6130 GGACGTGAACAAGGGCTGGCTGCAGAAGTACCGCGAGCATGCGCCCGAGCGCGTCATGAC 6189 ||| |||||||| |||||||||||||| ||| ||| |||| || || | ||||||| Sbjct 634 GGATGTGAACAAAGGCTGGCTGCAGAAAATCCGTGAGGATGCACCGGATCACGTCATGGG 575 Query 6190 CGATGCGTCGATGGCAGCGGCAAGATCA----AGGTG--------GGCGGTACCGGCGCT 6237 | | | | || |||| | | || |||| | ||| | || | Sbjct 574 CAGCACCACCACGG--GCGGTGAAACCACACCGGGTGCGGTGAAAGTCGGGAAAGGTGGA 517 Query 6238 GACTACGGGCAACATTGATGCCCTGGTGATGGGACTTGGTCGCCAACATGATCGAC-CCG 6296 || || | |||| | || ||| ||||||| ||| ||| | | |||||| | Sbjct 516 GAATA-TGCCAACCTGGACGCCGTGGTGAT-GGATGCCGTCAATGAGCTTATCGACGTGG 459 Query 6297 TGCATCA-GAAGAT-CCGAGCCTGGT-GTGATCTG-CGCCGCCAGCTGGTGCACGACAAG 6352 | | || || ||| ||| ||||| ||||| || | || ||||| || |||||| Sbjct 458 TCTACCAGGACGATGACGA-TCTGGTGGTGATTTGTGGTCGTGAGCTGCTGTCTGACAAG 400 Query 6353 TATTTCCCGATCATCAACCGTGACAACGCCCCCACCGAGAAGGTCGCGGCCGAACTGATC 6412 ||||||||| | ||||| ||| | | || || || | || ||||| ||||| Sbjct 399 TATTTCCCGCTGGTCAACAAAGACCAGGAAAACAGTGAAAAACTGGCTGCCGATATGATC 340 Query 6413 CTGGGCGCCAAGCGCATCGGTGGCCTGCAGCCGGTCATCGTGCCGTTCTTCCCGGCCAAG 6472 | | || ||||| |||||||||||| | || | ||||||||||||| | || Sbjct 339 ATCAGTCAGAAACGCATGGGTGGCCTGCAGGCCGTGCGTGCGCCGTTCTTCCCGCCGAAT 280 Query 6473 TCGCTGATGGTGACCAGCCTCAGCAACCTGTCGCTGTACTGGCAGATTGCCTCGCGCCGC 6532 ||||| || | ||| | || |||||||| | ||||||||| | | | |||||| Sbjct 279 GCGCTGCTGATCACCCGTCTGGATAACCTGTCCATTTACTGGCAGGAGGACACCCGCCGC 220 Query 6533 CGTCACATCATCGAGCAGCCGAACAAGAACCGCGTCGCCAACTTCGAGTCGTCCAATGAT 6592 ||| | ||||| | ||||| |||| | | ||||| || || || || Sbjct 219 CGTTCGGTTATCGACAACCCGAAACGTGACCGGATTGAAAACTTTGAATCCGTTAACGAA 160 Query 6593 GACTACGTGGTGGAGGACTACGGTCTGGGC-GCGGTGGCCGAGAACATCGAG 6643 | ||| ||||| ||||||||| | ||| || || ||| || |||||| || Sbjct 159 GCCTATGTGGTTGAGGACTACCG-CTGCGCAGCACTGGTGGAAAACATCCAG 109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107157653038978