Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 >seq1 Length=5851329 Score = 138 bits (152), Expect = 1e-27 Identities = 399/607 (66%), Gaps = 13/607 (2%) Strand=Plus/Plus Query 168519 ATTCTTAAAGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGAT 168578 ||| || ||||||| || ||| |||| || ||| || | ||| |||||| | Sbjct 5221433 ATTGTTGAAGAACTGTTGTGGTTTATTTCGGGAAGCACTAATGCGAAAGAATTAAGCGCC 5221492 Query 168579 ATAGGTGTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTT 168638 ||| |||||| ||||| | | ||||| | | |||||| | ||| || ||| Sbjct 5221493 CGAGGAGTTAAAATTTGGGATGCAAATGGAAGTAGGGAATTTCTCGATAGTCTAGGATTT 5221552 Query 168639 ACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGA 168698 || |||||| ||||||||||||||| || |||| || || |||||||||||| || Sbjct 5221553 ACTGAAAGACCAGAAGGTGATTTAGGACCTGTTTACGGTTTCCAATGGAGACATTTTGGT 5221612 Query 168699 GCTCAATAT-ATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCA 168757 ||| ||||| | || | |||| | || || || ||| ||||| | || ||| || | Sbjct 5221613 GCTGAATATGAGGGAGT-TGATGCCGACTATACAGGAAAAGGAATTGATCAACTAGCAGA 5221671 Query 168758 AACTATAAATACTTTACACAACAATCCGGAAAATAGAAGAATATTAATTAATAGTTGGGA 168817 ||| || || | ||||| || |||||||| | | | |||| | Sbjct 5221672 TGTTATTGATCAAATAAAAAACAACCCTTCTTCAAGAAGAATTATCTTATCTGCTTGGAA 5221731 Query 168818 TGTACCACAACTTGATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATGT 168877 | | | | ||||||||||||||| | || || ||||| || | || ||||||||||| Sbjct 5221732 TCCATCTGATCTTGATAAAATGGTTTTACCTCCATGTCATACACTTGTTCAATTTTATGT 5221791 Query 168878 AAGGAAAAAATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGG 168937 || | | ||| |||||| ||||||||| | | |||| | || || || Sbjct 5221792 ---TCAAGATGGAGAGTTAAGTTGTCATTTGTATCAACGCAGTGGTGATGTCGGTTTGGG 5221848 Query 168938 AGTACCTTATAATATTGGATTTTATTCATTTTTAA--CACTTG--TGCTAAGTAAATGGT 168993 ||| || | ||| |||| | || ||| || | | ||| || ||| || || | || Sbjct 5221849 AGTTCCATTTAACATTGCTTCATACTCACTTATGACCCACATGATTGCAAA--AATTTGT 5221906 Query 168994 GTAATTTGACGCCTGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACC 169053 | || | || |||| | ||| |||| ||| |||| |||| ||| | ||| ||||| Sbjct 5221907 GGAA--TAACAACTGGTGATTTTGTTCACACTATTGGCGATGCTCATATTTATAAAAACC 5221964 Query 169054 ATGTTGAACCTTTAAAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTAAAT 169113 ||||||| |||| | ||||||| || |||| || | || |||| ||| || Sbjct 5221965 ATGTTGATGCTTTGAGACAACAATTGACTCGAGAACCCTACCCATTCCCAACAATTAGAT 5222024 Query 169114 TTATAGG 169120 || |||| Sbjct 5222025 TTGTAGG 5222031 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 12/195 (6%) Strand=Plus/Minus Query 51870 GATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGT 51929 |||| |||| ||| |||| ||| | |||||| | | ||||| |||||| | || Sbjct 5533065 GATGACGATGTTGTTTTATTTAATCGTCAACCATCTTTACATAAGATTTCTATT--ATGT 5533008 Query 51930 TT--TAAAGTTAAAATTCAACCAGTAAAAACATTTAA----AATGAATTTGGCTATGACT 51983 || || |||| || |||| || ||| ||| ||||||| || || | Sbjct 5533007 CACATAGAGCTAAAGTTGTTCCAGGAAGAACTTTTCGTTTTAATGAATGTGCCTGT---- 5532952 Query 51984 AAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATAT 52043 | | |||||||||||||||||||||| |||||||||||||||||| | || || ||||| Sbjct 5532951 ACACCATATAATGCTGATTTTGATGGTGATGAAATGAATTTACATTTACCACAGACATAT 5532892 Query 52044 GGAGCTACTGCTGAA 52058 | ||||| || ||| Sbjct 5532891 GAAGCTAAAGCCGAA 5532877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635172939384360