Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq1 114 2e-20 seq16 93.3 6e-14 >seq1 Length=5851329 Score = 114 bits (126), Expect = 2e-20 Identities = 277/414 (67%), Gaps = 9/414 (2%) Strand=Plus/Plus Query 180550 AGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATAT-A 180608 |||||||||||||||||| |||| || || |||||||||||| || ||| ||||| | Sbjct 5221564 AGAAGGTGATTTAGGACCTGTTTACGGTTTCCAATGGAGACATTTTGGTGCTGAATATGA 5221623 Query 180609 TTGACTGTGATACCAACTATATCGGGCAAGGTATAGACCAATTAAGCCAAGTTATAGAAA 180668 || | |||| || |||||| || |||| || || ||| || | ||||| || Sbjct 5221624 GGGAGT-TGATGCCGACTATACAGGAAAAGGAATTGATCAACTAGCAGATGTTATTGATC 5221682 Query 180669 CTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGATAGTTGGAATGTATCACAAT 180728 |||||||| || || | ||||||| ||| || | ||||||| ||| | Sbjct 5221683 AAATAAAAAACAACCCTTCTTCAAGAAGAATTATCTTATCTGCTTGGAATCCATCTGATC 5221742 Query 180729 TACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTTTATGTTAGAAATAAAA 180788 | | |||| | | || |||||||| | || |||||||||||| | || | Sbjct 5221743 TTGATAAAATGGTTTTACCTCCATGTCATACACTTGTTCAATTTTATGTTCAAGATGGA- 5221801 Query 180789 TTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACCATATA 180848 | ||| ||| || ||||||||| | || ||| | || || || || |||| || Sbjct 5221802 --GAGTTAAGTTGTCATTTGTATCAACGCAGTGGTGATGTCGGTTTGGGAGTTCCATTTA 5221859 Query 180849 ATATTGCTTTCTATTCATTTTTG--GTATGTGTTCTCTCAAAGTGGTGCAATTTAACCCC 180906 | ||||||| || ||| || || | || | | ||| | ||| || |||| | Sbjct 5221860 ACATTGCTTCATACTCACTTATGACCCACATGATTGCAAAAATTTGTGGAA--TAACAAC 5221917 Query 180907 TGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATATTCTAACCATATTGA 180960 ||| | ||| |||||||| |||| |||| |||| | ||| |||||| |||| Sbjct 5221918 TGGTGATTTTGTTCACACTATTGGCGATGCTCATATTTATAAAAACCATGTTGA 5221971 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/158 (75%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 172926 CTGATTATAAACATGGTGAACAAAACCTTTG-TGAA-ACTATAATAAAATTTGCACAGGA 172983 ||| ||| | |||||||||||| ||||| ||| ||||| || || || || ||||| Sbjct 3118287 CTGCTTACCACCATGGTGAACAAT--CTTTGATGATGACTATTATCAATTTAGCTCAGGA 3118230 Query 172984 TTTTGTAGGTACAAATAACATAACATTACTTGAACCAGATGGTCAGTTTGGTACTAGACT 173043 || ||| || ||||||| || | ||| | || |||||| |||||||||||||| Sbjct 3118229 TTATGTTGGATCAAATAATATTAACTTATTGTTGCCCATTGGTCAATTTGGTACTAGACT 3118170 Query 173044 TGAAGGAGGTAAAGATTCAGCCGCATCAAGGTATATTT 173081 | |||||||||||||||| ||| | | | ||||||| Sbjct 3118169 TCAAGGAGGTAAAGATTCTGCCTCTCCTCGTTATATTT 3118132 >seq16 Length=715404 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/160 (75%), Gaps = 8/160 (5%) Strand=Plus/Minus Query 172926 CTGATTATAAACATGGTGAACAAAACCTTTG-TGAA-ACTATAATAAAATTTGCACAGGA 172983 ||| ||| | |||||||||||| ||||| ||| ||||| || || || || ||||| Sbjct 673109 CTGCTTACCACCATGGTGAACAAT--CTTTGATGATGACTATTATCAATTTAGCTCAGGA 673052 Query 172984 TTTTGTAGGTACAAATAACATAACATTACTTGAACCAGATGGTCAGTTTGGTACTAGACT 173043 || ||| || ||||||| || | ||| | || |||||| |||||||||||||| Sbjct 673051 TTATGTTGGATCAAATAATATTAACTTATTGTTGCCCATTGGTCAATTTGGTACTAGACT 672992 Query 173044 TGAAGGAGGTAAAGATTCAGC--CGCATCAAGGTATATTT 173081 | |||||||||||||||| || ||| || | ||||||| Sbjct 672991 TCAAGGAGGTAAAGATTCTGCTTCGCCTC--GTTATATTT 672954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655275191883000