Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq1 147 3e-30 seq16 89.7 6e-13 >seq1 Length=5851329 Score = 147 bits (162), Expect = 3e-30 Identities = 396/599 (66%), Gaps = 15/599 (3%) Strand=Plus/Plus Query 171559 GGAACTATACCATTACTTACTACaaaaaaaaTTGTATATACTAATATCCTTAAAGAACTT 171618 |||| || || ||| | || || ||||||| | | | | ||| || ||||||| Sbjct 5221388 GGAATAATGCCCTTAATAACAACTAAAAAAACTTTTTGGAAAGGTATTGTTGAAGAACTG 5221447 Query 171619 TTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTT 171678 || ||| ||||| || ||| || | ||| |||||| | ||| |||||| || Sbjct 5221448 TTGTGGTTTATTTCGGGAAGCACTAATGCGAAAGAATTAAGCGCCCGAGGAGTTAAAATT 5221507 Query 171679 TGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGAAAAGAA 171738 ||| ||| ||||| | | |||||| | ||| || |||||||||||| |||| Sbjct 5221508 TGGGATGCAAATGGAAGTAGGGAATTTCTCGATAGTCTAGGATTTACTGAAAGACCAGAA 5221567 Query 171739 GGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATAT-ATCGA 171797 ||||||||||| || |||| || || |||||||||||| || ||| ||||| | || Sbjct 5221568 GGTGATTTAGGACCTGTTTACGGTTTCCAATGGAGACATTTTGGTGCTGAATATGAGGGA 5221627 Query 171798 CTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTAATACTTT 171857 | | || | || || |||||| ||||| | || ||| || | |||| || | Sbjct 5221628 GT-TGATGCCGACTATACAGGAAAAGGAATTGATCAACTAGCAGATGTTATTGATCAAAT 5221686 Query 171858 ACAAAACAACC---CAGAAAGTAGAAGGATGTTAATTGATAGTTGGAATGTACCTCAACT 171914 | ||||||||| | ||| |||| || ||| || ||||||| | || | || Sbjct 5221687 AAAAAACAACCCTTCTTCAAGAAGAATTATCTTATCTG---CTTGGAATCCATCTGATCT 5221743 Query 171915 TGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTATGTCAGaaaaaaaTC 171974 ||||||||||||| | ||||| || || || | | ||||||||||| || | Sbjct 5221744 TGATAAAATGGTTTTACCTCCATGTCATACACTTGTTCAATTTTATGT---TCAAGATGG 5221800 Query 171975 AATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTATAA 172034 | ||| |||||| || |||||| | | |||| | || ||||| || || | ||| Sbjct 5221801 AGAGTTAAGTTGTCATTTGTATCAACGCAGTGGTGATGTCGGTTTGGGAGTTCCATTTAA 5221860 Query 172035 TATTGGATTTTATTCATTTTTAA--TACTTGTGTTAAGTAAATGGTGCAATTTAACTCCA 172092 |||| | || ||| || | | || || | | || | ||| || |||| | Sbjct 5221861 CATTGCTTCATACTCACTTATGACCCACATGATTGCAAAAATTTGTGGAA--TAACAACT 5221918 Query 172093 GGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATGTTGAACCTTT 172151 || | ||| |||| ||| |||| |||| ||| | ||| ||| |||||||| |||| Sbjct 5221919 GGTGATTTTGTTCACACTATTGGCGATGCTCATATTTATAAAAACCATGTTGATGCTTT 5221977 Score = 89.7 bits (98), Expect = 6e-13 Identities = 130/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 165161 TTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAAC 165220 |||||||||||||||| || ||||| || | | ||| | |||||||||| Sbjct 3118326 TTAAAGTTGCTCAATTGGCGGGAGCTGTTGGCGAGATGTCTGCTTACCACCATGGTGAAC 3118267 Query 165221 AAAATTT-ATG-TGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATAT 165278 || ||| ||| ||| |||| || || || || || |||| |||||| |||||||||| Sbjct 3118266 AATCTTTGATGATGA--CTATTATCAATTTAGCTCAGGATTATGTTGGATCAAATAATAT 3118209 Query 165279 AGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC 165338 ||| | || ||||||||||||||| ||| | ||||||||||||||||||| Sbjct 3118208 TAACTTATTGTTGCCCATTGGTCAATTTGGTACTAGACTTCAAGGAGGTAAAGATTCTGC 3118149 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 50438 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 50497 |||||||||||||||||||||| |||||||||||||||||| | || || |||||| || Sbjct 5532947 CATATAATGCTGATTTTGATGGTGATGAAATGAATTTACATTTACCACAGACATATGAAG 5532888 Query 50498 CTACTGCTGAA 50508 ||| || ||| Sbjct 5532887 CTAAAGCCGAA 5532877 >seq16 Length=715404 Score = 89.7 bits (98), Expect = 6e-13 Identities = 130/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 165161 TTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAAC 165220 |||||||||||||||| || ||||| || | | ||| | |||||||||| Sbjct 673148 TTAAAGTTGCTCAATTGGCGGGAGCTGTTGGCGAGATGTCTGCTTACCACCATGGTGAAC 673089 Query 165221 AAAATTT-ATG-TGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATAT 165278 || ||| ||| ||| |||| || || || || || |||| |||||| |||||||||| Sbjct 673088 AATCTTTGATGATGA--CTATTATCAATTTAGCTCAGGATTATGTTGGATCAAATAATAT 673031 Query 165279 AGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC 165338 ||| | || ||||||||||||||| ||| | ||||||||||||||||||| Sbjct 673030 TAACTTATTGTTGCCCATTGGTCAATTTGGTACTAGACTTCAAGGAGGTAAAGATTCTGC 672971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628526588152320