Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4 215 1e-50 seq1 102 2e-16 >seq4 Length=2360143 Score = 215 bits (238), Expect = 1e-50 Identities = 185/229 (81%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||||||||| || || || ||||| || || || ||||||| Sbjct 1036609 TACCTCCACGGAGACGAAGAACTAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAG 1036550 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || || || ||||||||||| || ||||| | ||||||||| ||||| | Sbjct 1036549 AAAGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTG 1036490 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||||||||||||||||| || ||||| ||||| |||||| ||| |||| Sbjct 1036489 GGATTCCTTCCTTATCTTGAATCTTTGACTTGACATTGTCAATTGTATCAGAAGGCTCTA 1036430 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || || ||||||||||| ||||| || || |||||||| Sbjct 1036429 CCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACGAAGATCTGCAT 1036381 Score = 214 bits (236), Expect = 4e-50 Identities = 198/251 (79%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||| ||||| || || || || || || ||||||||||||| Sbjct 1035697 TACCTCCACGGAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCAG 1035638 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || || || |||||||||||||| ||||||| ||||||||| ||||| | Sbjct 1035637 AAAGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTG 1035578 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| ||||||||||||| || || || ||||| |||||| ||| |||| Sbjct 1035577 GGATTCCCTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTA 1035518 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTT 82821 | || | ||| || || ||||||||||| ||||| ||||| || ||||| ||| | ||| Sbjct 1035517 CCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCATGGTTAAAGTTT 1035458 Query 82822 TCTACTAAACA 82832 || || ||| Sbjct 1035457 AGTAATATACA 1035447 Score = 210 bits (232), Expect = 4e-49 Identities = 184/229 (80%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||| ||||| || || || || || || ||||||||||| | Sbjct 1036153 TACCTCCACGAAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGG 1036094 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || || || |||||||||||||| ||||||| ||||||||| ||||| | Sbjct 1036093 AAAGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTG 1036034 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||||||||||| || || || ||||| |||||| ||| |||| Sbjct 1036033 GGATTCCTTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTA 1035974 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || || ||||||||||| ||||| || || |||||||| Sbjct 1035973 CCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACGAAGATCTGCAT 1035925 Score = 208 bits (230), Expect = 1e-48 Identities = 183/228 (80%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | | ||| ||||| ||||| || || || ||||| || || || |||||||| Sbjct 1036836 ACCTCCACGGAGACGAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGA 1036777 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| |||| || || || |||||||||||||| ||||||| ||||||||| ||||| || Sbjct 1036776 AAGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGG 1036717 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||| ||||| ||||||||||||| || || || ||||| |||||| ||| ||||| Sbjct 1036716 GATTCCCTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTAC 1036657 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || ||||||||||| ||||| ||||| |||||||| Sbjct 1036656 CTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 1036609 Score = 201 bits (222), Expect = 2e-46 Identities = 182/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||| ||||| || || || || || || ||||||||||| | Sbjct 1036381 TACCTCCACGAAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGG 1036322 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || || || ||||||||||| || ||||||| ||||||||| ||||| | Sbjct 1036321 AAAGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATTAATCTTTGTTGGTCTGGTG 1036262 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| || || ||||||||||||| || || || ||||| |||||| ||| |||| Sbjct 1036261 GAATTCCCTCTTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTA 1036202 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || || ||||||||||| ||||| ||||| |||||||| Sbjct 1036201 CCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 1036153 Score = 197 bits (218), Expect = 3e-45 Identities = 181/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||| ||||| || || || ||||| || || || ||||| | Sbjct 1035925 TACCTCCACGAAGACGAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCGG 1035866 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || || || ||||||||||| || ||||| | ||||||||| ||||| | Sbjct 1035865 AAAGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTG 1035806 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| ||||||||||||| || || || ||||| |||||| ||| |||| Sbjct 1035805 GGATTCCCTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTA 1035746 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || || ||||||||||| ||||| ||||| |||||||| Sbjct 1035745 CCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATCTGCAT 1035697 >seq1 Length=5851329 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || || | |||||| ||||| || |||||||| || ||||| || || ||| Sbjct 5400445 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTAGCT 5400386 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||||| || ||||| || || ||||| | ||| || ||||| || || | Sbjct 5400385 TTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAGA 5400326 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || || |||||| Sbjct 5400325 GTCTTAACGAAAATTTGCATT 5400305 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | ||||| ||||| || || ||||||||||||||||| ||||| ||||| || Sbjct 5040825 ACCTCCACGTAAACGAAGAACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAATCTGA 5040766 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCC 82672 || |||| || || || ||||||||||| Sbjct 5040765 GAGTGTTCTTCCATCCTCAAGTTGTTTTCC 5040736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981819815738993