Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 1e-11 >seq1 Length=5851329 Score = 86.0 bits (94), Expect = 1e-11 Identities = 183/271 (68%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 183008 AAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGC 183067 ||||| |||| | || ||||||||| | |||| | || | ||| | |||||||||| | Sbjct 3442643 AAACAAATGATACACTTTGGAATGCAGCTCAAAAAGAGCTATTGATAAAAGGAAAAATTC 3442702 Query 183068 ATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGA-ACTCCGGAA 183126 || ||| || ||||||||||||| ||| | |||| |||||| | || ||| ||| Sbjct 3442703 ATGGTTACGTAAGAATGTACTGGGCAAAACAATTACTAAAATGGA-AGGATGATCCTGAA 3442761 Query 183127 GATGCTTTGAGTTATAGTATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCT 183186 ||||| |||| || || | | || |||| || | || |||| ||||| Sbjct 3442762 GATGCATTGAAAATTACCATTGAATTAAATGATAAATATTCCATTGATGGTAATGATCCA 3442821 Query 183187 AACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAA 183246 |||||||| | | ||||||| |||||| || | || || || |||||| Sbjct 3442822 AACGGATATACTGCTATAATGTGGTGTATTTGTGGTGCAATGGACCAAGGGTTTAAAGAA 3442881 Query 183247 AGACCTATATTTGGAAAGATAAGATATATGA 183277 ||| ||| | ||||| || ||| ||||| Sbjct 3442882 AGAAAGATAATAGGAAAAATTAGACCTATGA 3442912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903404571220320