Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1 224 2e-53 seq233 199 9e-46 >seq1 Length=5851329 Score = 224 bits (248), Expect = 2e-53 Identities = 546/809 (67%), Gaps = 21/809 (3%) Strand=Plus/Plus Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||||| | ||||| || ||| || | ||||| || |||| |||||||| | ||||||| Sbjct 2653822 TTGAAAGACCTCAGCATATGCTTATGCGTGTCGCCATTGCCATTCATGGTGAAGATATTA 2653881 Query 110422 AAGCTGTTATTGAATGTTAT-GATGTATTAAGTAAAAA-GAAAGCT-ATTCATGCTACTC 110478 | ||| |||| | ||| ||| ||| || |||| || | | || |||| | | Sbjct 2653882 CATCTGCTATTCAGACATATAGATATAT---GTCAAAACGATTGTTTATCCATGGATCAC 2653938 Query 110479 CTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAA 110538 | || ||||||| || || || || || | ||| |||||| | || || Sbjct 2653939 CAACATTATTTAATGCCGGCACCCTACGACCCCAGCTTTGTTCCTGCTTTTTGTTAACAA 2653998 Query 110539 TTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTA 110598 | | |||||||||||||||||| || ||||| || | ||| | |||| ||||||| | Sbjct 2653999 TGAGCGATGATTCTATTGAAGGAATCTATGACACTTTAAAACGATGTGCTGTTATTTCAA 2654058 Query 110599 AAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCT-CAAAAGGAGCAAATATC 110657 | | |||| ||| | || ||| | ||| | | || | | | ||| | ||| Sbjct 2654059 AGATGGCTGGGGGAGTAGG-ATTAAGTGTCAGTACAATCCGTGCTACAGGCTCTTTTATT 2654117 Query 110658 GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACT 110717 | | | || || | |||| ||| | ||||| |||||| | || | ||| ||| Sbjct 2654118 TCTGGAACTAATGGGTCATCAAATGGTTTGGTTCCGATGTTACGTGTTTACAATAGTACT 2654177 Query 110718 GCAAAATATGTGAATCAAGGTGGTAAGAGAAA---TGGCTCATTTGCTATCTATCTCGAA 110774 | ||||| | ||||||||||| | || |||| |||||||||| ||| | || Sbjct 2654178 GTTCGTTATGTTGACCAAGGTGGTAATAAAAGACCTGGCGCATTTGCTATATATTTGGAG 2654237 Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCA-AGGATTTGAAGA 110833 || |||||| | ||||| | |||| | || || ||||| || |||| ||||| Sbjct 2654238 CCATGGCATGCGGATATTATCCAATTTCTTGAG-TTAAAAAAAAACACAGGACCAGAAGA 2654296 Query 110834 ACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGT 110893 | ||||||| |||||||||||||| | | | ||| || |||||||||| ||||||||||| Sbjct 2654297 AGAAAGAGCGCGTGATTTATTTTACGGACTTTGGGTTCCAGATTTATTTATGAAACGTGT 2654356 Query 110894 T-CAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATG 110952 | ||| | | || ||||| | ||||||||| || | ||| ||||| |||| Sbjct 2654357 TGAAAGCGATTCAGAT-TGGTCGTTAATGTGTCCTAATGAATGTCCGGGTCTTGGTGATT 2654415 Query 110953 TATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAG-AAGGCAAGTT-TCG 111010 | ||| | || ||||| | ||||| | | |||||||||| | || || ||| | | Sbjct 2654416 GTTTTGGTGATGATTTTGATAAACTTTATGTACAATATGAAAATGAAAAGC--GTTATAG 2654473 Query 111011 CAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGG 111070 |||||| | ||| | | ||||| || ||| |||||| || | ||||| || Sbjct 2654474 GAAACAAGTAAAAGCCAGATATATTTGGCAGAAGATCTGTGAATCTCAGATAGAAACGGG 2654533 Query 111071 AACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGG 111130 | ||| ||||| | || || || ||| |||||| ||| ||||||| |||||||| Sbjct 2654534 TATTCCATATATGCTTTACAAGGACCATTGTAATCGTAAAAGTAATCAACAAAATTTAGG 2654593 Query 111131 AACAATTAAGTCTAGTAA--TTTGTGCTG 111157 |||||| |||| | || ||||||||| Sbjct 2654594 AACAATAAAGTGTTCAAATCTTTGTGCTG 2654622 Score = 114 bits (126), Expect = 3e-20 Identities = 335/512 (65%), Gaps = 12/512 (2%) Strand=Plus/Minus Query 304979 CAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGAT 305038 ||||| | ||||||||| | ||| | || |||| ||| || || |||||||||||| Sbjct 5533404 CAACGTCTAAAAGGTAAACATGGTAGATTTAGAGGAAATTTATCCGGTAAACGTGTTGAT 5533345 Query 305039 TTTAGTGCAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTT 305098 || || |||| ||||| |||| ||| || | | | || || || | || ||| Sbjct 5533344 TTCTCTGGGAGAACAGTAATTTCACCAGATCCTAACTTAAAAATTGATCAAGTTGGTGTT 5533285 Query 305099 CCAATTGAAATTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAA-AAATATTAA 305157 || || | | ||| || || ||||| ||||| | ||||| ||| | ||||||| | Sbjct 5533284 CCTATACATGTAGCTAAAATTCTTACATTCCCAGAAATAGTTA-CGACTACAAATATTGA 5533226 Query 305158 ACATTTGAGACGTTGTGTTCTTAATGGAAATAGCAAGTATCCAGGTGCTCGTGCTGTTAT 305217 | | ||| || |||| ||||| | ||| | || || ||| | |||| Sbjct 5533225 AAAAATGAAACAACTTGTTAGAAATGGTGAATCAAAGCACCCTGGAGCTAACCATCTTAT 5533166 Query 305218 AAAACACAAGCAAAA----GAA-GACAATATCTTTGAACCATATCGATTTAAAACAATTC 305272 | || || ||| ||| || || || | | || || ||| || || || Sbjct 5533165 AGAA-----GCTAAAACTGGAATGAAAAAATTTCTAAAATATGGTGATCGTGAAAAAATC 5533111 Query 305273 AGTAAAATGCTTGAAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTT 305332 || | ||| | | |||||| || | ||||| |||| | ||| ||| Sbjct 5533110 GCTATGAATCTTAGACCTGGAGATATTATTGAACGCCATTTAGATGATGACGATGTTGTT 5533051 Query 305333 CTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTA 305392 | || ||| | |||||||| | ||||| || ||||| ||| | |||| || ||||| Sbjct 5533050 TTATTTAATCGTCAACCATCTTTACATAAGATTTCTATTATGTCACATAGAGCTAAAGTT 5532991 Query 305393 TTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTT 305452 | | ||| || ||||| || |||| | |||| ||||| || |||||||| |||||| Sbjct 5532990 GTTCCAGGAAGAACTTTTCGTTTTAATGAATGTGCCTGTACACCATATAATGCTGATTTT 5532931 Query 305453 GATGGAGATGAAATGAATATGCATGTACCTCA 305484 ||||| |||||||||||| | ||| |||| || Sbjct 5532930 GATGGTGATGAAATGAATTTACATTTACCACA 5532899 Score = 113 bits (124), Expect = 1e-19 Identities = 390/601 (65%), Gaps = 8/601 (1%) Strand=Plus/Plus Query 131698 TATTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAA 131757 ||||||||| || ||||| ||| | ||||| | | || || | ||||| | Sbjct 4933667 TATTCATAGTGAAATGTACTCAAAGCTTATTGAAACTTACATTCGTGATCAGGATGAAAG 4933726 Query 131758 AAATAAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGC 131817 ||||| | || ||||| | || |||| || || | |||||||| || ||||| Sbjct 4933727 GAATAAGCTTTTCAATGCTTTGGATGAATTCCCATTCATCAGGAAGAAAGCTGATTGGGC 4933786 Query 131818 TATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTG 131877 | | | ||||||| ||| | |||| |||| | | | | ||||| || Sbjct 4933787 TCTAAGATGGATTGCTGATAAAAATGCTACTTTTGGAGAACGCGTAATTGCTTTCGCAGC 4933846 Query 131878 TGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGG 131937 |||||| || |||||||| || ||| | || ||| || || |||||||||||||| || Sbjct 4933847 TGTTGAGGGAATATTCTTCTCCGGTTCATTTGCTGCCATATTCTGGCTTAAGAAGCGCGG 4933906 Query 131938 ATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATAC 131997 ||||||||||| | || || ||| | || || || ||||||| | | || Sbjct 4933907 CTTGATGCCTGGGTTAACACACTCAAATGAGTTAATTTCCCGAGATGAGGGGCTACACCG 4933966 Query 131998 TGAATTTGCTATAT-TAATCTATAGAAAATTTGCTGATAAACTTGATGAAAATAATATTA 132056 ||| ||||| || | | || || || | || | | |||| |||| | ||| | Sbjct 4933967 TGATTTTGC-ATGTCTTATGTACAGCTACTTGGAGAACAAACCATCTGAAGAACGTATCA 4934025 Query 132057 AACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTT 132116 || || | || | || || ||| ||| |||||||| | | |||| || ||| | ||| Sbjct 4934026 AAGAAATAATTAAAGATGCCGTTAGTATTGAGAAGGAATATCTTACTGATGCTCTCCCTG 4934085 Query 132117 GCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTGAATTCGTTGCTGATC 132176 || ||||||| ||||| | | | ||| || || || |||| |||||| |||| Sbjct 4934086 TTGATATGATTGGAATGAACTCAGGTTTAATGTGTGATTATATCGAATACGTTGCCGATC 4934145 Query 132177 GTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCCAAAACCCCTATACATGGA 132236 | | ||||| | | ||| ||||||| || ||||||| | | | | Sbjct 4934146 ACCTGTTGGTAGAACTTAATTGTCAAAAGCTTTATAATACTAAAAACCCATTTGATTTTA 4934205 Query 132237 TGGAGTCAATTTCGC--TTGAAGGTAAAACGAACTTCTTCGA-AAGTCGTGTATCTGAGT 132293 || || ||| || | ||||||||||||| || ||||| || ||| | |||||||| | Sbjct 4934206 TG--GTTAATCTCTCAATTGAAGGTAAAACCAATTTCTTTGAGAAGAAG-GTATCTGAAT 4934262 Query 132294 A 132294 | Sbjct 4934263 A 4934263 Score = 113 bits (124), Expect = 1e-19 Identities = 327/496 (66%), Gaps = 12/496 (2%) Strand=Plus/Minus Query 58737 ATTGTTCGTTTACAGCATCAATATGATTATGGTAAACGTGAGCATCTCCAATAATATGAT 58796 |||||| | | |||||||| ||| || | |||| |||||||| |||||| | ||| Sbjct 5221988 ATTGTTGTCTCAAAGCATCAACATGGTTTTTATAAATATGAGCATCGCCAATAGTGTGAA 5221929 Query 58797 GAACCAATC--CAGGtttttttCCTGTC-TTTTTACACATTATATGAAGCAATACGGAGT 58853 || |||| ||| | || |||| ||||| || || || || || | |||| Sbjct 5221928 CAA--AATCACCAGTTGTTATTCCACAAATTTTTGCA-ATCATGTGGGTCATAAGTGAGT 5221872 Query 58854 ATGAAACCATATTAAAAGGGATTCCAAGAAACATATCACCACTACGTTGATAAAATTGTA 58913 ||||| | || ||||| || | ||| | | | ||||||||| |||||||| || || Sbjct 5221871 ATGAAGCAATGTTAAATGGAACTCCCAAACCGACATCACCACTGCGTTGATACAAATGAC 5221812 Query 58914 GATTAAGAGTGTCATCTGCTTCTACATAAAATTGACATAAAATATGACAAGGAGGAAGTG 58973 | | | | | || | ||| |||||||||||| | ||||||| ||||| | Sbjct 5221811 AACTTA-ACTCTC--CATCTTGAACATAAAATTGAACAAGTGTATGACATGGAGGTAAAA 5221755 Query 58974 CCATTTTATCAATATCACTTACATTCCATGCACTGAAAATAATGCGACGAGAATGAGGGT 59033 |||||||||||| |||| | |||||| ||| || ||||| | | ||| ||||| Sbjct 5221754 CCATTTTATCAAGATCAGATGGATTCCAAGCAGATAAGATAATTCTTCTTGAAGAAGGGT 5221695 Query 59034 CATTTTTAATAAGTTCTTCACAATGTTTTATTTGGTCAAATCCATT---AGTATATTCAG 59090 ||||| || | || | || | || ||| |||| ||| || ||||| || | Sbjct 5221694 TGTTTTTTATTTGATCAATAACATCTGCTAGTTGATCAATTCCTTTTCCTGTATAGTCGG 5221635 Query 59091 TATTGGCATCAATGTATTTATCTCCCCAATAACGCCATTGAAAACCATATACAGGTCCAA 59150 || | | |||| | | || ||| | |||||| ||||| || |||||||| | Sbjct 5221634 CATCAACTCCCTCATATTCAGCACCAAAATGTCTCCATTGGAAACCGTAAACAGGTCCTA 5221575 Query 59151 GAGTTCCTTCAGGATATTCATTTAAACCACGAGAGTCAAGAAATTCTCTTGTTGAATTAC 59210 | ||||| || |||| | || || || || |||||||| || || ||| Sbjct 5221574 AATCACCTTCTGGTCTTTCAGTAAATCCTAGACTATCGAGAAATTCCCTACTTCCATTTG 5221515 Query 59211 CATCCCAAATATGAAC 59226 |||||||||| | ||| Sbjct 5221514 CATCCCAAATTTTAAC 5221499 >seq233 Length=3140 Score = 199 bits (220), Expect = 9e-46 Identities = 521/786 (66%), Gaps = 9/786 (1%) Strand=Plus/Minus Query 110370 CCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTT 110429 |||||||| | || | ||||||||| |||| ||||| ||| | ||||| | ||||| Sbjct 2611 CCTCAACATTTATTGATGCGTGTTGCGGTTGGGATTCACGGAGAAGATATAAGTTCTGTT 2552 Query 110430 ATTGAATGTTATGATGTAT-TAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATT 110488 ||||| |||||| ||| | | ||||| || ||| ||| | || || |||| Sbjct 2551 ATTGAGACTTATGAC-TATATGTCTCAAAAGTGGTTTACTCACGCTTCCCCAACTTTATT 2493 Query 110489 TAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTT-CTAGGAATTAACGATG 110547 ||| || ||||||| || ||| || |||| || |||||| ||| ||| || || Sbjct 2492 TAATGCGGGAACTAGGCGACCCCAACTGTCTTCATG-TTTCTTGCTAACAATGGCCGGTG 2434 Query 110548 ATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTG 110607 ||||||| ||||| ||||| || | || ||| || ||| | || || ||| | | Sbjct 2433 ATTCTATAGAAGGAATTTACGACACACTGAAACAATGCGCTTTGATCTCGAAATCTGCAG 2374 Query 110608 GAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGA 110667 | || || ||| | | |||||| |||| | | || || || ||| | | | Sbjct 2373 GTGGTATCGGTTTAAATGTTCATTGTATTAGGGCTAATGGTTCATTTATTGGTGGGACAA 2314 Query 110668 AGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATG 110727 | || | || | |||| | |||||||||| ||||| || || | || ||| |||| Sbjct 2313 ATGGGACATCCAATGGATTAATTCCAATGTTGAGAGTTTTTAATAATACGGCACGTTATG 2254 Query 110728 TGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATT 110784 | | ||||||||||| | || || ||||||| || ||| | ||||| |||||| Sbjct 2253 TTGACCAAGGTGGTAATAAAAGGCCCGGAGCATTTGCAATATATTTAGAACCATGGCATG 2194 Query 110785 CAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCAC 110844 | ||||| | ||||| | || ||| || || ||| ||||| ||||||||| Sbjct 2193 CTGATATCATGGAATTTCTGGACCTTAAGAAGAACACAGGTCCAGAAGAGGAAAGAGCAC 2134 Query 110845 GTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATG 110904 | ||||| || |||| | ||| || | ||||||||||||||||||||| | || || Sbjct 2133 GAGATTTGTTCTATGGGCTTTGGGTTCCTGATTTATTCATGAAACGTGTTGAGAAAGATT 2074 Query 110905 GCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAG 110964 ||||| | |||||||||||| | |||||| || ||| | || | | Sbjct 2073 CTTACTGGTCGTTAATGTGTCCTCATGAATGTCCTGGACTTGAAGATTGTTGGGGTGATG 2014 Query 110965 AGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTC-GCAAACAAATTCCA 111023 | || || | | ||| ||||||| | || || | ||| | | || |||||| | Sbjct 2013 AATTCGAGAAATTATACATTAAATATG-AGGAGGAGAAACGTTACAGAAAGCAAATTAAA 1955 Query 111024 GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATT 111083 || || ||||| || || ||| || | ||||| || || ||||| || Sbjct 1954 GCAAGAGTTATTTGGCAAAAGATTTGTGAGAGCCAGATAGAAACAGGCACACCTTACATG 1895 Query 111084 TTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCT 111143 | |||||||||||| |||||| ||| ||||||| ||| | ||||| || |||| | Sbjct 1894 GTTTATAAAGATCATTGTAATCGGAAAAGTAATCAACAAAATCTTGGAACTATCAAGTGT 1835 Query 111144 AGTAAT 111149 |||| Sbjct 1834 TCTAAT 1829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186803874055107