Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq220 589 6e-164 >seq220 Length=3625 Score = 589 bits (652), Expect = 6e-164 Identities = 860/1203 (71%), Gaps = 27/1203 (2%) Strand=Plus/Minus Query 9251 GGGTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGCGGCGCGAACGGCCGGAAG 9310 ||||| || |||| |||||| || ||| ||||| ||| | || | | | ||| Sbjct 3358 GGGTCATAACCGATCCACACTTCGCGCCAGCCAAACGGGCGCAGAGCCAGTGCATGAAAG 3299 Query 9311 TCCTCCCATACTTCCCAGGTGTCCACCATCCCGCGCATG-AGCATCGA-GAGCGGAAACA 9368 || ||| ||||||||| |||||||||| | ||| || ||| ||| |||||| || | Sbjct 3298 TCGGTCCAGACTTCCCAGCTGTCCACCATGCA-CGCCTGCAGC-TCGCTGAGCGGGAATA 3241 Query 9369 CGGACGCGTTGTCGTCGATGAACGCGCACATCAGCAGGTTGGCGAAATCGAGTTCGCTGT 9428 |||||||| ||||| | ||| |||||||||||||||| | | ||| ||||| Sbjct 3240 CGGACGCGAGATCGTCCACAAACTCGCACATCAGCAGGTTCTGGTATTCGGCCGGGCTGT 3181 Query 9429 ACTCCAGCCGCAACTGGTCGATGTCGAACAGGTTGCAGCCGCCGCGCAGCGCGTCCTCTA 9488 |||||| ||||||||||| | |||||| ||||| || |||||||||| || || || | Sbjct 3180 ACTCCATGCGCAACTGGTCAAGGTCGAAAAGGTTACATCCGCCGCGCACTGCATCTTCCA 3121 Query 9489 CCGTCACGATCTGGCGCCACTGACCGTCAGCGCAGCGCATGCCGTTGCGCAGCGCGGTGT 9548 | || || |||||||| | || ||||| ||||| ||| |||| | ||| | ||| Sbjct 3120 CGGTGACTATCTGGCGGTATTGCCCGTCTGCGCACAGCAGGCCGGGGGCCAGATTGCTGT 3061 Query 9549 GGCTCACGTCGATCTTGACCTGTTTGTCCTTGGCCTTGC---CGCGGTTGAACAGTGCGC 9605 || || |||||| | |||| | | | ||| |||| | ||||||||||| || | Sbjct 3060 GGGACAGGTCGATGTCCACCTTATCGGCTTTG---TTGCGCCCACGGTTGAACAGCGCAC 3004 Query 9606 CGGACCAGAACGGGTAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTACGTTTGCC 9665 ||||||||||||| || || || | || |||||| |||||||| || || ||||| | Sbjct 3003 CGGACCAGAACGGATAAGCACTGTGGGTCAGGCTGGATGGCGTGGAAAAATAGGTTTGTC 2944 Query 9666 GCCAGTGCTTGTGGATCGCCATGCCGGACGCGACCTTGCGCAGTTCCTGGAAGCGCGGCA 9725 |||| | ||||| || ||||| ||||| || || ||||||||||||||||| ||| | Sbjct 2943 GCCATTTTTTGTGAATAGCCATACCGGAAGCCACTTTGCGCAGTTCCTGGAATTTCGGTA 2884 Query 9726 CCCAGAAGTACTCGTCGAAGTACAGGTTGCCGTGGTAGCTCTGCGCGGTGCGGGCGTTGG 9785 |||||| ||||| || | ||||| |||||| ||||||||| ||||||||||| |||| Sbjct 2883 TCCAGAAATACTCATCCAGATACAGATTGCCGGTGTAGCTCTGGGCGGTGCGGGCATTGG 2824 Query 9786 TCCCGAGGAAGTACAGCGTCGCCCCGTTGGGCAACACCATCGGGTCGCCCTTCAGCTCGA 9845 | ||||||||||| ||||| || ||||| || | ||||||||| ||||| |||||||| | Sbjct 2823 TGCCGAGGAAGTAAAGCGTGGCTCCGTTAGGAAGCACCATCGGATCGCCTTTCAGCTCCA 2764 Query 9846 CGCCGGCTGCGTCCTTCGCGAATTGGATGATGTACTGCTTGAAGACGTGCGCCTGTGCCT 9905 | || || || || ||||| | ||||||||||||||| || ||||| |||||||||| Sbjct 2763 CCTCGACT---TCTTTGGCGAAGTCGATGATGTACTGCTTAAAAACGTGAGCCTGTGCCT 2707 Query 9906 TGCTGGCCGATAGAAAAATCTGGTTGCGGCCAGTGGTCAGCGCGTCGATGAACGCCTCGC 9965 | ||||| || || ||||||||||| || || || ||| ||||| || | || || | Sbjct 2706 TACTGGCAGAAAGGAAAATCTGGTTACGTCCGGTAAGCAGGGCGTCAATCAGGGCTTCAC 2647 Query 9966 GTGCGAAGTACCACGTCGCGCCGATCTGCCGGCTCTTGAGCAGGTTGCGGATGCGCTCGA 10025 | || ||||| | |||||||||||||| || ||| ||||||||||||||||| | | Sbjct 2646 GGGCAAAGTAAAAGGTCGCGCCGATCTGGCGTGACTTCAGCAGGTTGCGGATGCGGTTGG 2587 Query 10026 CCTGCCCAGCCTCGTACCAGACGCGCTGGTAATCGAACATCGAGTCGCGGAA---GGCCT 10082 | || || || ||||| ||||||||| | |||||| ||| |||| | | Sbjct 2586 TTTTTCCGGCTTCCCACCAGTGGCGCTGGTAGTTGAACATGGAGGAATGGAAAATCTCTT 2527 Query 10083 CCAGGAGCTGCGTCTGTTCCTCGGGGCTGATCGCGTTGCGCTCGGGCTTGCTGCGCGGTC 10142 |||| || ||||||| |||| ||| | || || || | | |||||| | Sbjct 2526 CCAGCTTCTCAATCTGTTCATCGG---TGAAGACATTCTTTTCCGGTTGACGGCGCGGGC 2470 Query 10143 CCTTGTTGCGATTCGCCACCTTCGGGTTCAGGTCGGTTTCGTTGCCGCTGGCTTCGT--- 10199 | |||||||| || || || || ||||| | ||||| ||||||||||| | | || Sbjct 2469 CTTTGTTGCGGTTGGCGACGTTAGGGTTTAAGTCGGCTTCGTTGCCGC---CATTGTTAA 2413 Query 10200 ACCGGCGCACGCGCGCCATGCGCTCCATTTGTCGGCCGAGCAGGTCGATTTCCTTGTAGT 10259 || || | ||||| ||||||| || || | |||||||| ||||| ||| | | Sbjct 2412 ACTTGCCGATCCGCGCGTGGCGCTCCGACTGGCGCGCCAGCAGGTCAATTTCTTTGAAAT 2353 Query 10260 CCCGGCCTTCCTTCACTTCTTTGGCGACGAGCTGCGCCAT-GCGCTCTTCGATGCTGGAC 10318 | ||||| || || || | |||||| || || ||| | || || || | Sbjct 2352 CTTTCCCTTCTTTGTGCTCCTTCATAATGAGCTG-GCAATAGCGTGCGGCGGTGGTGAGC 2294 Query 10319 GCCACGCGCTCCACCGCATCCGTCGCATCCCACCCATCGCGGCGCTTCCAGCTGTGCACC 10378 || | |||| || | || ||||| ||||| ||||||||||| || Sbjct 2293 TGCATCTGATCCAGCGGCCCATAATCACCCCACTTGTCGCGTTTTTTCCAGCTGTGAACA 2234 Query 10379 GTTACAGGCTTGACGCCCAGCATTTCGGCGATGCGCGCGACGCGGTAGCCCTGCCAGTAC 10438 ||| || || ||||||||||||| || ||||| || |||||||| ||||| ||||| Sbjct 2233 GTTGCAACTTTCTCGCCCAGCATTTCAGCAATGCGGGCTACGCGGTATCCCTGAAAGTAC 2174 Query 10439 AGC 10441 ||| Sbjct 2173 AGC 2171 Score = 307 bits (340), Expect = 3e-79 Identities = 500/715 (70%), Gaps = 20/715 (3%) Strand=Plus/Minus Query 11846 TGCGAGCAGACCAACTCCGACACGCACATCACCTACCAGAGGCTGGACGCCTGGGCCAAG 11905 ||||| |||||||||| || ||| | |||||| || ||||||| ||||| Sbjct 822 TGCGAACAGACCAACTTTGATACGGTGCTGACCTACGCGAAGCTGGACCTGTGGGCGCGT 763 Query 11906 TTCCCCGACTTCCAGACTCGGATCCGCGACGCCATCATCAAGCGCCAGGCGCTGGATCGC 11965 | | || |||||| || ||||| |||||||| | || || ||||||||||| ||| Sbjct 762 TATCAGGATTTCCAGCTGCGTATCCGTAACGCCATCGTGAAACGTCAGGCGCTGGACCGC 703 Query 11966 ATCATGATCGGCTTCAACGGTGTCAGCCGAGCCGCCACGTCCAATCGGGTGGTCAACCCG 12025 |||||||||||||| ||||| || | || || || || || || | |||||| Sbjct 702 ATCATGATCGGCTTTAACGGCGTGAAGCGTGCGAAAACCTCTAACCGTAGCGAAAACCCG 643 Query 12026 ATGCTCCAGGACGTGAACAAAGGCTGGCTGCAGAACCTGCGCGAACAGGCGCCGCAGCGC 12085 |||| ||||| ||||||||||||||||||||||| | || || | || ||| | | | Sbjct 642 CTGCTGCAGGATGTGAACAAAGGCTGGCTGCAGAAAATCCGTGAGGATGCACCGGATCAC 583 Query 12086 GTCATGGA------------GGAAGGCAAAAAAGCGGCCGGCAAGATCATCGTCGGCGCG 12133 ||||||| || || ||| | | || | | | ||||| Sbjct 582 GTCATGGGCAGCACCACCACGGGCGGTGAAACCACACCGGGTGCGGTGAAAGTCGGGAAA 523 Query 12134 GGTGGGGACTACGGCAACCTGGACGCCCTGGTGTTCGACGTCGTGAACCAGCTGGTCGAG 12193 ||||| || || | ||||||||||||| ||||| | || | ||| || |||| |||| Sbjct 522 GGTGGAGAATATGCCAACCTGGACGCCGTGGTGATGGATGCCGTCAATGAGCTTATCGA- 464 Query 12194 CCGTGGTACGCC--GAGGATCCGGAGCTGGTCGTGCTGTGTGGTCGCAACCTGCTGGCCG 12251 |||||| || || ||| || ||||| ||| | |||||||| | |||||| | | Sbjct 463 -CGTGGTCTACCAGGACGATGACGATCTGGTGGTGATTTGTGGTCGTGAGCTGCTGTCTG 405 Query 12252 ACAAGTACTTCCCGCTGGTGAACAAAGACCGCGACC-CGGTCCAGCAGATCGCGGCCGAC 12310 ||||||| ||||||||||| |||||||||| || | || | | | || ||||| Sbjct 404 ACAAGTATTTCCCGCTGGTCAACAAAGACCAGGAAAACAGTGAAAAAC-TGGCTGCCGAT 346 Query 12311 CTCATCATCAGCCAGAAGCGCATCGGCAACCTGCAGGCGGTGCGCGTGCCGTACTTCCCG 12370 | |||||||| ||||| ||||| || ||||||||| ||||| | ||||| ||||||| Sbjct 345 ATGATCATCAGTCAGAAACGCATGGGTGGCCTGCAGGCCGTGCGTGCGCCGTTCTTCCCG 286 Query 12371 GCGAATGGCCTGCTGGTGACGCGCCTGGACAACCTGTCCATCTACTACCAGGAGAACGCG 12430 |||||| |||||| | || || ||||| ||||||||||| |||| |||||| || | Sbjct 285 CCGAATGCGCTGCTGATCACCCGTCTGGATAACCTGTCCATTTACTGGCAGGAGGACACC 226 Query 12431 CGCCGTCGCACGATCCTGGACAACGCGAAGCGCGATCGCATCGAGAACTACGAGTCGAGC 12490 ||||| || || | | |||||| |||| || || || || || |||| || || Sbjct 225 CGCCGCCGTTCGGTTATCGACAACCCGAAACGTGACCGGATTGAAAACTTTGAATCCGTT 166 Query 12491 AACGACGCGTACGTGATCGAAGACCTGGCG-TGCGCAGCCATGGCCGAGAACATC 12544 ||||| || || ||| | || || || || |||||||| ||| || |||||| Sbjct 165 AACGAAGCCTATGTGGTTGAGGA-CTACCGCTGCGCAGCACTGGTGGAAAACATC 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127883908563016