Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 8e-15 >seq4 Length=2360143 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || ||||||||| |||||||||||||| || || | | | || || Sbjct 1035905 ACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCGGAAAGAGTTCTTCCATCCTCA 1035846 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||||||||| || ||||| | || || ||| | || | || || ||||| | Sbjct 1035845 AGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 1035786 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | || | ||| | || || | || || |||| ||||| ||||| Sbjct 1035785 ATCTT-TGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTT 1035727 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||| || || || ||||| ||||||||| Sbjct 1035726 GCCTGTCAAAGTCTTAACAAAAATCTGCATA 1035696 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||||||||| ||||||||||| || || || | | | || || | |||||||||||| || Sbjct 1036572 CTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAA 1036513 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||| | || || ||| | || | ||||| || || ||| || || | |||| Sbjct 1036512 GATCAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTATCTTGAATCTT-TGACTTGACAT 1036454 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | || || | || || |||| ||||| ||||| ||||| || || || | Sbjct 1036453 TGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGA 1036394 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 1036393 CGAAGATCTGCATA 1036380 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || ||| ||||| || || |||||||| || || | | | || || Sbjct 1036361 ACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTCA 1036302 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||||||||| || || || | || || ||| | || | || |||||||| | Sbjct 1036301 AGTTGTTTTCCGGCGAAGATTAATCTTTGTTGGTCTGGTGGAATTCCCTCTTTGTCTTGA 1036242 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | || | ||| | || || | || || |||| ||||| ||||| Sbjct 1036241 ATCTT-TGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTT 1036183 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||| || || || ||||||||||||||| Sbjct 1036182 GCCTGTCAAAGTCTTGACAAAGATCTGCATA 1036152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701648431040