Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4 127 5e-24 >seq4 Length=2360143 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | ||||| ||||| |||||| | || || || |||||| Sbjct 1035700 CAGATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCTGAT 1035759 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||||||||| || || ||||| || ||| ||| Sbjct 1035760 ACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAACAA 1035819 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | |||||||||||||| || | || |||||||| ||| | ||||||||||| || Sbjct 1035820 AGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTACAACATC 1035879 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||||| || |||||| | ||| | | ||||| Sbjct 1035880 CAAAAAGAGTCAACCCTTCACTTGGTTCTTCGTCTTCG 1035917 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | ||||| ||||| |||||| | || || || |||||| Sbjct 1036384 CAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCTGAT 1036443 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||||||||| || |||||||| || ||| ||| Sbjct 1036444 ACAATTGACAATGTCAAGTCAAAGATTCAAGATAAGGAAGGAATCCCACCAGACCAACAA 1036503 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | |||||||||||||| || | || |||||||| ||| | | ||||||||| || Sbjct 1036504 AGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAACATC 1036563 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 || |||||||| || |||||| | ||| Sbjct 1036564 CAAAAAGAGTCAACCCTTCACTTAGTT 1036590 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | ||||| ||||| |||||| | || || || |||||| Sbjct 1036156 CAGATCTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCTGAT 1036215 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||||||||| ||||| |||||| || ||| ||| Sbjct 1036216 ACAATTGACAACGTCAAGTCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCAACAA 1036275 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | |||||||||||||| || | || |||||||| ||| | ||||||| || | Sbjct 1036276 AGATTAATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAATATT 1036335 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| || |||||| | ||| | | ||||| Sbjct 1036336 CAAAAGGAGTCAACCCTTCACTTGGTTCTTCGTCTTCG 1036373 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | ||||| ||||| |||||| | || || || |||||| Sbjct 1036612 CAGATTTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCTGAT 1036671 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||||||||| || || ||||| || ||| ||| Sbjct 1036672 ACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAACAA 1036731 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | |||||||| ||||| || | || |||||||| ||| | | ||||||||| || Sbjct 1036732 AGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAACATC 1036791 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 || |||||||| || |||||| | ||| Sbjct 1036792 CAAAAAGAGTCAACCCTTCACTTGGTT 1036818 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | ||||| ||||| |||||| | || || || |||||| Sbjct 1035928 CAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCTGAT 1035987 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||||||||| || |||||||| || ||| ||| Sbjct 1035988 ACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAACAA 1036047 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | |||||||| ||||| || | || |||||||| ||| | ||||||| || | Sbjct 1036048 AGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAATATT 1036107 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| || |||||| | ||| | | ||||| Sbjct 1036108 CAAAAGGAGTCAACCCTTCACTTGGTTCTTCGTCTTCG 1036145 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 ||||| ||||| |||||| | || || || |||||| ||| | || || ||| | Sbjct 1035493 ACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCTGATACAATTGACAACGTCAAGTCA 1035552 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || || ||||| || ||| |||||| | |||||||| ||||| Sbjct 1035553 AAGATTCAAGACAAGGAGGGAATCCCACCAGACCAACAAAGATTAATCTTCGCTGGAAAA 1035612 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | || |||||||| ||| | | ||||| || | || || ||||| || |||||| Sbjct 1035613 CAACTTGAGGATGGAAGAACTCTTTCTGATTATAATATTCAAAAGGAGTCAACCCTTCAC 1035672 Query 206374 CTTGTT 206379 | ||| Sbjct 1035673 TTGGTT 1035678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181811911599627