Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 4e-14 >seq4 Length=2360143 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || || || ||| | ||||| | || || || ||| | Sbjct 1036153 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGA-GCCTTC 1036211 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || || ||| ||| || |||||||| || || || || || Sbjct 1036212 TGATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCA 1036271 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | || | || ||| |||||||| || |||| |||| | | |||||| || Sbjct 1036272 ACAAAGATTAATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAA 1036331 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||||||| || || ||| |||| || || Sbjct 1036332 TATTCAAAAGGAGTCAACCCTTCACTTGGT 1036361 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || || || || || ||| | ||||| | || || || ||| Sbjct 1035468 CATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGA-GCCTT 1035526 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | ||||| || || | || || ||| ||| || || ||||| || || || || | Sbjct 1035527 CTGATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACC 1035586 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 | |||||| | || | || || |||||||| || |||| |||| | | ||||| | Sbjct 1035587 AACAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTATA 1035646 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||| || || ||| |||| || || Sbjct 1035647 ATATTCAAAAGGAGTCAACCCTTCACTTGGT 1035677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445091134119840