Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1 188 1e-42 >seq1 Length=5851329 Score = 188 bits (208), Expect = 1e-42 Identities = 488/730 (67%), Gaps = 28/730 (4%) Strand=Plus/Minus Query 161192 GCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATATACAGCACAGACTGATGCT 161251 ||||| |||||||| ||||| ||| || |||||||||||||||| || |||||| Sbjct 4802509 GCACAAAGTCATGTTAAAGTTAGTTTTGATTTACCTGAATATACAGCAGAGGTCGATGCT 4802450 Query 161252 CTGGGAACCCTAAGAGTATTGGAGGCAGT--TCGTCTCCTAGGTATGACAGATAGGGTCC 161309 | || || ||||| | | || || | | | | | | | ||| | || || Sbjct 4802449 GTAGGTACATTAAGACTTCTTGATGCTATAGTAGCATGCAATCTTCAACATAAAG--TCA 4802392 Query 161310 GTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAG 161369 | | || || || || ||| || | ||||| || ||||| | || || |||| Sbjct 4802391 GATTTTATCAAGCTTCTACCTCAGAACTTTATGGAAAAGTTCAAGAAATCCCTCAAAAAG 4802332 Query 161370 AAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGA 161429 | |||||||| ||||| |||||| |||||||| ||||| ||| | || | ||||||| Sbjct 4802331 AGACAACACCATTCTATCCACGAAGTCCATATGCAGTAGCAAAATTGTACGCTTATTGGA 4802272 Query 161430 TTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACC 161489 | |||| || || | || ||||| || || | | ||||||| ||||||| | Sbjct 4802271 TAATAAAAAATTATCGTGAAGCATATGGAATATTTGCTTGCAATGGTATTTTATTCAATC 4802212 Query 161490 ATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCC 161549 |||| |||||| || | ||| | | ||| ||||| | || ||||| |||| || | Sbjct 4802211 ATGAATCACCAAGAAGAGGTAATAATTTTGTAACAAGAAAAATTACAAGGGCTGTAGCTA 4802152 Query 161550 GTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATT 161609 || |||| ||| | || || ||| || |||||| | | | | ||| |||| Sbjct 4802151 AAATCAGTATAGGTGTTCAAGAAACATTATTACTTGGTAATTTGGATGCCAAACGTGATT 4802092 Query 161610 GGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTG 161669 |||||||||| | || ||||| || ||||||||| || | ||||| || || | Sbjct 4802091 GGGGTCATGCGAAGGAGTATGTTGAAGCTATGTGGAGAATCCTTCAACATGATGAACCAG 4802032 Query 161670 ATGACTATGTGATTGCCACAGGTAAAGAGTATTCA----GTGAAGGACTT-TGTA--GAG 161722 |||||| ||| ||||| ||||||||| | ||| || | || || |||| | Sbjct 4802031 ATGACTTTGTTATTGCTACAGGTAAA----ACTCAAAGTGTCAGAGATTTCTGTAACTTG 4801976 Query 161723 GCATCTGCTGAATACTTTGGTATGAAGATTGA-GTGGCAGGGTGAAGGATTGGATGAAGT 161781 || | | | ||| ||||||| || ||| | ||||| ||||||||| | ||||||| Sbjct 4801975 GCTTTTTCCGAA---ATTGGTAT-AAAATTAATATGGCAAGGTGAAGGAGTTAATGAAGT 4801920 Query 161782 GGGTATAGA-TAGATTTACAAAGAAGGTTGTCGTTCGTGTGAGTGA--CAAA-TACTTCA 161837 ||||| || ||| |||| ||| || ||||| || ||| |||| || | | Sbjct 4801919 TGGTATTGAGGAGA-ATACAGGGAAAATTCGTGTTCGCGT---TGATCCAAATTATTATA 4801864 Query 161838 GACCAGCAGAGGTTGAAACTCTCTGGGGTGATCCCACTAAGGCTAAAGAGGTATTGGGTT 161897 ||||| | || ||||| |||| || || || || || |||||||| ||| | || | Sbjct 4801863 GACCAACTGAAGTTGATCTTCTCATTGGAGACCCAACAAAAGCTAAAGAAGTACTAGGAT 4801804 Query 161898 GGAAACCTAA 161907 || || |||| Sbjct 4801803 GGGAAGCTAA 4801794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729924244141560