Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 196 4e-45 seq5 172 4e-38 >seq1 Length=5851329 Score = 196 bits (216), Expect = 4e-45 Identities = 475/710 (67%), Gaps = 12/710 (2%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || ||||| ||||||||||| || || || ||||| || ||||| ||| | || Sbjct 4933545 GTATTGGCCTTTTTTGCTGCATCAGATGGTATTGTCAACGAGAATTTAGTTGAAAGATTC 4933604 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | | |||||||| | || || ||||| | ||| || || || ||||||||||| ||| Sbjct 4933605 TCAAAGGAAGTTCAGGTCCCTGAGGCACGCTTTTTCTACGGTTTCCAAATTGCCATGGAA 4933664 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029 ||||||||| ||||||||| || || || || ||||| ||| | | || Sbjct 4933665 AATATTCATAGTGAAATGTACTCAAAGCTTATTGAAACTTACATTCGTGATCAGGATGAA 4933724 Query 44030 AAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGG 44089 | | || | || ||||| | || | | || || | | ||||| || ||| Sbjct 4933725 AGGAATAAGCTTTTCAATGCTTTGGATGAATTCCCATTCATCAGGAAGAAAGCTGATTGG 4933784 Query 44090 GCCCTTAAATGGATAA---ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCA 44146 || || | |||||| || ||||| | ||||||||||||| | | || || ||| Sbjct 4933785 GCTCTAAGATGGATTGCTGATAAAAATGCTACTTTTGGAGAACGCGTAATTGCTTTCGCA 4933844 Query 44147 GTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGA 44206 | ||| || || || ||||| || || || ||||| |||||||| ||| | ||||| || Sbjct 4933845 GCTGTTGAGGGAATATTCTTCTCCGGTTCATTTGCTGCCATATTCTGGCTTAAGAAGCGC 4933904 Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266 || |||||||||||||| || |||||||||||||| || ||||| || |||| Sbjct 4933905 GGCTTGATGCCTGGGTTAACACACTCAAATGAGTTAATTTCCCGAGATGAGGGGCTACAC 4933964 Query 44267 TGCGATTTTGCTTG-CTTGT-TACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGA 44324 | |||||||| || ||| | ||| | || || ||||| | || || || || | | Sbjct 4933965 CGTGATTTTGCATGTCTTATGTAC--AGCTA-CTTGGAGA--ACAAACCATC-TGAAGAA 4934018 Query 44325 C-AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCA 44383 | || | ||| || || ||| || || | || || | |||| | | || || Sbjct 4934019 CGTATCAAAGAAATAATTAAAGATGCCGTTAGTATTGAGAAGGAATATCTTACTGATGCT 4934078 Query 44384 TTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATT 44443 | ||||| || | || |||||||| | ||| ||| | ||||| |||||| || Sbjct 4934079 CTCCCTGTTGATATGATTGGAATGAACTCAGGTTTAATGTGTGATTATATCGAATACGTT 4934138 Query 44444 GCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTT 44503 || |||| | | | ||||| ||| | || | |||| | ||||||| ||| Sbjct 4934139 GCCGATCACCTGTTGGTAGAACTTAATTGTCAAAAGCTTTATAATACTAAAAACCCATTT 4934198 Query 44504 GATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAA 44553 |||||||||| ||| | || | ||||| ||||| || || ||||| || Sbjct 4934199 GATTTTATGGTTAATCTCTCAATTGAAGGTAAAACCAATTTCTTTGAGAA 4934248 Score = 127 bits (140), Expect = 2e-24 Identities = 401/618 (65%), Gaps = 10/618 (2%) Strand=Plus/Plus Query 40702 TAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAG 40761 |||| || ||||||| ||||||||||| |||| ||||||||||| |||||||| | Sbjct 5221404 TAACAACTAAAAAAACTTTTTGGAAAGGTATTGTTGAAGAACTGTTGTGGTTTATTTCGG 5221463 Query 40762 GTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAATGCGCACAGTT 40821 | | |||||||| || ||||| | ||||||| | |||||| |||| | | Sbjct 5221464 GAAGCACTAATGCGAAAGAATTAAGCGCCCGAGGAGTTAAAATTTGGGATGCAAATGGAA 5221523 Query 40822 CTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTG 40881 || || | | ||| ||||||| || || ||||||||| | || |||| Sbjct 5221524 GTAGGGAATTTCTCGATAGTCTAGGATTTACTGAAAGACCAGAAGGTGATTTAGGACCTG 5221583 Query 40882 TTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCTGATTATA 40941 |||| || || || | | |||||||||| || ||||||| | | | || |||| Sbjct 5221584 TTTACGGTTTCCAATGGAGACATTTTGGTGCTGAATATGAGGGAGTTGATGCCGACTATA 5221643 Query 40942 CCAATAAAGGAATGGATCAATTA-CAGTGCGTTATAGATACGATTAAATCCGATCCCGAT 41000 | |||||||| |||||| || ||| ||||| ||| || ||| | | || | Sbjct 5221644 CAGGAAAAGGAATTGATCAACTAGCAGAT-GTTATTGATCAAATAAAAAACAACCCTTCT 5221702 Query 41001 AGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCA 41060 || | || || || | || ||||| ||| | || | || |||| || || Sbjct 5221703 TCAAGAAGAATTATCTTATCTGCTTGGAATCCATCTGATCTTGATAAAATGGTTTTACCT 5221762 Query 41061 CCTTGTCAT----TTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATT 41116 || |||||| ||||| || ||||| ||| |||| || | ||||| || Sbjct 5221763 CCATGTCATACACTTGTT----CAATTTTATGTTCAAGATGGAGAGTTAAGTTGTCATTT 5221818 Query 41117 GTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCT 41176 ||||||| | ||||| | || | || || || |||||||| || || | || Sbjct 5221819 GTATCAACGCAGTGGTGATGTCGGTTTGGGAGTTCCATTTAACATTGCTTCATACTCACT 5221878 Query 41177 GCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTT 41236 | || | ||||||||| | || ||| | ||||||| ||||||||||| | Sbjct 5221879 TATGACCCACATGATTGCAAAAATTTGTGGAATAACAACTGGTGATTTTGTTCACACTAT 5221938 Query 41237 AGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAA 41296 || |||| |||||||| | || || | || | || | | ||||| |||| ||| | Sbjct 5221939 TGGCGATGCTCATATTTATAAAAACCATGTTGATGCTTTGAGACAACAATTGACTCGAGA 5221998 Query 41297 ACCTAGACCATTTCCAAC 41314 ||| ||||| ||||| Sbjct 5221999 ACCCTACCCATTCCCAAC 5222016 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 115031 AATGGTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTC 115090 ||| |||||||| || |||| ||||| ||||||||||| | ||| || |||||| || Sbjct 2650380 AATTGTCATACGAGATGGAACGGCATGAGGATTAATAATGATGTCAGGAGATAACCCTTC 2650321 Query 115091 GGCTGTGAACGGCATGTCGTGCTGATCGTACATCATTCCACAAGTTCCTTTTTGAGCGGT 115150 ||| || ||||| || | ||| ||||||||| || ||| |||||||| | Sbjct 2650320 TTTTGTAAAAGGCATATCTTCTTGACGGTACATCATACCCATAGTACCTTTTTGTCCATG 2650261 Query 115151 AAACGATGCAAATTTATCACCAATCTCAGG 115180 || ||||||||||||||||| | ||| Sbjct 2650260 CCTTGAGGCAAATTTATCACCAATTTGAGG 2650231 >seq5 Length=1484661 Score = 172 bits (190), Expect = 4e-38 Identities = 418/622 (67%), Gaps = 22/622 (4%) Strand=Plus/Minus Query 19220 ATTGGAATGT-GAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTT 19278 ||||| || | ||||| ||| |||||| || || |||||| || |||| |||||| Sbjct 567831 ATTGGGATTTCGAAAGT-ATGGGAATTGGTGGTTTAGATAAAGAATTCTCTGCAATCTTC 567773 Query 19279 CGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGG-ATGTAA 19337 | ||||| || | | | || | |||| || ||||||| || ||| || Sbjct 567772 AGAAGAGCCTTCTTTAGTAGATTATTCCCACCAGAGCAAGTTGAACAATTAGGTATG-AA 567714 Query 19338 ACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAG 19397 || || ||||| | || |||||||| ||||| || ||| ||||||||||| || | Sbjct 567713 GCACGTCCGTGGTATCTTACTTTATGGACCACCCGGAACTGGTAAAACATTAATAGCTCG 567654 Query 19398 --AGAACTTAGTAAA----TTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGA 19451 ||| ||| ||| ||| | | | | |||| |||||| || ||||| ||| | Sbjct 567653 TCAGA---TAGGAAAAATGTTAAATGCCAGAGAACC---CAAAATCGTCAATGGACCTCA 567600 Query 19452 AATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGC 19511 ||| || |||||||||| ||| || |||| ||| || || || || | ||| || Sbjct 567599 AATATTGGATAAATATGTTGGTGAAAGTGAAGCTAATATAAGAAAATTATTCGGTGATGC 567540 Query 19512 TGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGA 19571 ||| || ||| ||| | | || ||| || | ||||| || || | ||||| Sbjct 567539 TGAGGAGGAATTCAAAAGATGTGGTAACAATTCAGCTCTCCACATCATTATTTTTGATGA 567480 Query 19572 ATTGGACGCAATCTGTAAGCAAAGAGGTTCT---GGTGTAA-AT--GGAGTACATGACAC 19625 | | || || || ||||| |||||||| | | || | || || || || || || Sbjct 567479 AATCGATGCTATATGTAAACAAAGAGGAACACAAGCTGGATCATCCGGTGTCCACGATAC 567420 Query 19626 TGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGT 19685 || || |||||| |||| ||||| | || |||||| | ||||| || || |||||||| Sbjct 567419 AGTAGTTAATCAAATCCTAACAAAAATGGATGGTGTTGATCAACTAAACAACATTTTAGT 567360 Query 19686 TATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTT 19745 ||| || ||||| |||||| || | || || || |||||| |||| ||| | | Sbjct 567359 TATCGGTATGACAAATAGAAGAGATATGATTGATGAAGCATTATTAAGACCTGGTAGAAT 567300 Query 19746 GGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACAT 19805 |||| || | || ||||| ||||| || || ||| ||||| |||| ||| |||| Sbjct 567299 GGAAGTACAAATGGAAATATCATTACCTGACGAGAATGGGCGTGTACAAATATTACACAT 567240 Query 19806 ACATACATCAACCATGCGACAA 19827 |||||| ||| ||| || || Sbjct 567239 CCATACAGCAAAGATGAGAGAA 567218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453156574935