Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 141 8e-29 >seq1 Length=5851329 Score = 141 bits (156), Expect = 8e-29 Identities = 731/1146 (64%), Gaps = 54/1146 (5%) Strand=Plus/Minus Query 130747 ATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTA--ACGTAAATGTTGCTC 130804 |||| |||| | |||||||||||||||| | || ||||| | ||||| ||| | Sbjct 2655260 ATGAGTATTTACAATTTGAAAATCACCAGATAAAACCCGTCTTGTATATAAAT-TTGAT- 2655203 Query 130805 GTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATG 130864 || | || |||| ||||| || | || | || || | ||||| || |||||||| Sbjct 2655202 GTATATGGCTCAATAGATTCATTACTCCCAAGAATCTGAGATGTAGAAGCAGTGGGCATT 2655143 Query 130865 TATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCC 130924 ||| ||||| | |||||||||| ||| | | ||||| ||||||| | | | Sbjct 2655142 AATGAAACTAACAATGAATTACGAATACCAAATTTAGAAATTTTCTGCTTCAAATTTTTC 2655083 Query 130925 CAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTA 130984 |||| ||||| | | | || ||||| |||||||||| |||| || || || ||| Sbjct 2655082 CAATTCCATAAATTGCTCGGAGTGACACC---CCACATATCATATTGAAGAATCCCCTTA 2655026 Query 130985 CTGGCGGGACTGGAT---TCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTG 131041 | || ||| || |||| ||| ||| ||| | | ||| | || | | Sbjct 2655025 GATACAGGT---GATCCATCAAACGTTTCATAGGGTCCATGAATCTTAGCTAATTCATAG 2654969 Query 131042 CTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCT 131101 ||| || | || || | |||||| ||||| |||| | |||| | | | ||| Sbjct 2654968 GAAGCCTCAAGTGCACCATGATAAATAGTTTCAAAGATTTTTCTATTAAGATCCCTAGCT 2654909 Query 131102 TG-GTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCC 131160 | | || | | | ||| || |||| | | ||| | ||||| || || |||| || Sbjct 2654908 TCTGGTGATG-CAAATGGATATCTCATGAGTAAAAATGTATCTGCAAGTCCTTGTACTCC 2654850 Query 131161 AACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAACATTCG-GTGGGATAAAGGT 131219 || || | |||| |||||| ||| || ||| | ||| ||||| ||| || Sbjct 2654849 AATTCCAATAGGTCGATGTTTGGTATTTGATAAACGTGCTTCTTCAAGTGGG-TAATAGT 2654791 Query 131220 TAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGT 131279 |||| ||||| | || || ||||| | ||| | ||| | | || | || || Sbjct 2654790 TAATATCAATAACCTTATTCAAATTCTTTGTCAAAATCTTTGTAATG-TTGTGAAGGAGT 2654732 Query 131280 CGAAA-TCAAACGTGCCAG----TTTCGAGGT-----TTACAAATTGATTTACACATATT 131329 ||| ||||| ||| |||| | | ||||| | ||| | || Sbjct 2654731 TTAAAATCAAAAA---CAGGTTTTTTCTCTTTAATCATGACAAAATTATTAAGTGCAATA 2654675 Query 131330 GACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCAC 131389 ||| | | |||||| || || ||| | | | || | ||||||||||| || || Sbjct 2654674 GACCCTAAATTACATACAGCAACTTCATTAGGAGAAGAAAATTGAACAATTTCAGCACAA 2654615 Query 131390 AAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGGTCC 131449 | ||| | |||||| || || |||||||||||||| |||||| ||| ||||||| Sbjct 2654614 AGATTTGAACACTTTATTGTTCCTAAATTTTGTTGATTACTTTTACGATTACAATGGTCC 2654555 Query 131450 TTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAAAGAGT 131509 ||||| | ||| || || | |||||||| | |||| |||| || | | | | Sbjct 2654554 TTGTAAAGCATATATGGAATACCCGTTTCTATCTGAGATTCACAGATCTTCTGCCAAATA 2654495 Query 131510 TTTCGAGCAGACAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTC-----GTACA 131564 | || || | ||| | | || || ||||| |||||| ||||| Sbjct 2654494 TATCTGGCTTTTACTTGTTTCCTATAA------CGCTTTTC---ATTTTCATATTGTACA 2654444 Query 131565 --ACGTTT--CAAAGTTTTGGCCAAACGAACTGTCCAA-ATTGGGACATTCGCTGGGACA 131619 | |||| |||| | | ||||| || | |||| | |||||||| | ||||| Sbjct 2654443 TAAAGTTTATCAAAATCATCACCAAAACAA-TCACCAAGACCCGGACATTCATTAGGACA 2654385 Query 131620 CATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAA 131679 ||||| |||||| | | |||||| || |||||||| ||||| || ||||| | Sbjct 2654384 CATTAACGACCAATCTGAATCGCTTTCAACACGTTTCATAAATAAATCTGGAACCCAAAG 2654325 Query 131680 CGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAA 131739 |||| || | ||| | ||| ||| ||||||| || | ||||||| || | | Sbjct 2654324 TCCGTAAAATAAATCACGCGCTCTTTCTTCTTCTGGTCCTGTGTTTTTTTTTAACTCAAG 2654265 Query 131740 AAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCC---TTTGCG 131796 ||| | | ||| ||||||||||| || |||||||| | || | |||||| | | Sbjct 2654264 AAATTGGATAATATCCGCATGCCATGGCTCCAAATATATAGCAAATGCGCCAGGTCTTTT 2654205 Query 131797 CTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAA 131856 ||||| ||||| | ||||| |||||| | | ||||| || || ||||| || |||| Sbjct 2654204 ATTACCACCTTGGTCAACATAACGAACAGTACTATTGTAAACACGTAACATCGGAACCAA 2654145 Query 131857 ACCGTT 131862 ||| || Sbjct 2654144 ACCATT 2654139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931359992744