Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq233 120 4e-22 seq1 93.3 5e-14 seq16 91.5 2e-13 >seq233 Length=3140 Score = 120 bits (132), Expect = 4e-22 Identities = 272/403 (67%), Gaps = 6/403 (1%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 |||||| |||| ||| |||||||||| ||||||||||||| | ||||| || || || Sbjct 1226 GTAGATATTTGATGTATATGGTTCAATCGATTCATTATTACCAAGAATTTGGGCAGTTGA 1285 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 ||| || |||||||| || | || | | || | | ||| | | || ||| Sbjct 1286 GGCAGTAGGCATTGGGGCAAGTAACAAAGAATTCCTTACACCATGTTTAGCAATATTTTC 1345 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGA--GCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 || | ||||||||| | | | |||||| | || |||| |||| ||| ||||| Sbjct 1346 TTTCAATGTATCCCAGTCCCA-TAAATTGCTTGGCCTGACATTCC-ACATATCATACTGA 1403 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || | || | || || || | | | |||||||||| || | | ||||||| Sbjct 1404 AGAATTCCCTTAGATACTGGCGATCCTTTATAAGTTTCATAGGGTCCATCGCGTTCAGCC 1463 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 || ||||| ||||||| | | || || || ||||| || || ||| | Sbjct 1464 AACTCACATGAAGCCTCCAAAGCACCATGGTAAATTGTTTCGAAAATTTTCTTATTAAGT 1523 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACC 111063 || || |||| | |||| ||||| || | || || || ||| |||| || | ||| Sbjct 1524 TCTTTAGCTTGAGGTGAAGTAAATGGATACCT-CATAAGCATGAATGCATCTGCCAAACC 1582 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTT 111106 ||||||||| | ||| || |||| ||||| ||||||||| ||| Sbjct 1583 TTGAACACCAATACCTATTGGTCGGTGTCTCATATTAGATTTT 1625 >seq1 Length=5851329 Score = 93.3 bits (102), Expect = 5e-14 Identities = 286/433 (66%), Gaps = 12/433 (3%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || |||| || ||||||||||||||||| | ||||||||| || || Sbjct 4933975 GCAAAATCACGGTGTAGCCCCTCATCTCGGGAAATTAACTCATTTGAGTGTGTTAACCCA 4933916 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | || |||||||| | ||| | || || ||| ||||| ||||||||||| || Sbjct 4933915 GGCATCAAGCCGCGCTTCTTAAGCCAGAATATGGCAGCA-AATGAACCGGAGAAGAATAT 4933857 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGC-GAAGGAGCGAGACTTTGCATCAA 122836 ||||| ||| || || |||| | |||||| | ||| ||| | || || ||| Sbjct 4933856 TCCCTCAACAGCTGCGAAAGCAATTACGCGTTCTCCAAAAGTAGC-ATTTTTATCAGCAA 4933798 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 122896 |||| | | ||||| | || |||||| || |||| | | | || | | Sbjct 4933797 TCCATCTTAGAGCCCAATCAGCTTTCTTCCTGATGAATGGGAATTCATCCAAAGCATTGA 4933738 Query 122897 ATAACTGCTTCTTTTCAGATCC--ATCCTTAATGTATTTGTCAATCAATTTTGAATATGT 122954 | | || ||| |||| |||| ||| |||||| | ||||| | ||||| || | Sbjct 4933737 AAAGCTTATTCCTTTC--ATCCTGATCACGAATGTAAGTTTCAATAAGCTTTGAGTACAT 4933680 Query 122955 TTCGCCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTT 123012 ||| | ||||| |||| |||||| ||| | ||||||| |||| || || Sbjct 4933679 TTCACTATGAATATTTTC--CATGGCAATTTGGAAACCGTAGAAAAAGCGTGCCTCAGGG 4933622 Query 123013 ATCTGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCA 123072 | |||||| || | | || | | | | |||||| ||||| ||||| || || Sbjct 4933621 ACCTGAACTTCCTTTGAGAATCTTTCAACTAAATTCTCGTTGACAATACCATCTGATGCA 4933562 Query 123073 GCAAAGAATGCCA 123085 ||||| || |||| Sbjct 4933561 GCAAAAAAGGCCA 4933549 >seq16 Length=715404 Score = 91.5 bits (100), Expect = 2e-13 Identities = 244/361 (68%), Gaps = 23/361 (6%) Strand=Plus/Plus Query 182519 ACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCG 182578 |||||||||||| |||||||| | ||| ||||| ||||||||||| ||| ||||| | Sbjct 673720 ACCCTTGATGTGGGAACCATCCTGATCTTGATCTGCCATAATCATAACACGTCCATATCT 673779 Query 182579 --AAGTTCAGAAA-CATCTTG-GTAGTCT--TTT---CCTTGTTGAAGACCAAGGATCTT 182629 ||||| | |||| ||| | ||| | | ||| | |||||| ||||| Sbjct 673780 CAAAGTTTTTCTCTCGTCTTCAGTATCATACTTTAAACGGTATTGTAAACCAAGAATCTT 673839 Query 182630 CTTGAGATCAT-TG---AACTCCTGGTTTG--ATGTAAGCTGTGCCACCGAAGCGTCCCG 182683 ||||| || || | || | ||| || ||| ||| || ||| || || Sbjct 673840 A-----ATCATGTGTCCAATTTCTTGATTGTCAT-TAATCTGCTTCATAGAACAATCGCG 673893 Query 182684 AACATTCTTACATTT-ACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAG 182742 |||||| |||||| ||| ||||||||||| || || || | |||||| || || ||| Sbjct 673894 TACATTCA-ACATTTTACCACGAAGTGGGAATACTCCATAATAATCACGTCCTACAACAC 673952 Query 182743 AGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACT 182802 ||||| | ||| || | ||||| || ||||| ||||| || | |||||| ||||| | Sbjct 673953 CAAGACCGGAAACTGCTAATGTTTTGGCTGAATCTCCCTCAGTAAGAATGAGTGTACATT 674012 Query 182803 TTCCAGATTGTGCCGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATACCGGTAATTT 182862 | || | | ||||| |||| || || || || | || || ||||| ||| || Sbjct 674013 TGTAGGAATTTTTTGTACCAGCCTCATTAGCATCCTCAAGTTTTGGGATACCTTTAACTT 674072 Query 182863 T 182863 | Sbjct 674073 T 674073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628027391815200