Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq233 178 2e-39 >seq233 Length=3140 Score = 178 bits (196), Expect = 2e-39 Identities = 683/1054 (65%), Gaps = 34/1054 (3%) Strand=Plus/Minus Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974 || || || ||||| |||||| |||| ||||| ||||| | || ||||||||| | Sbjct 1915 GAAACAGGCACACCTTACATGGTTTATAAAGATCATTGTAATCGGAAAAGTAATCAACAA 1856 Query 104975 AATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT-TTACAGACAA 105033 ||| | || |||||| |||| ||||||||||| || || | |||| || || | Sbjct 1855 AATCTTGGAACTATCAAGTGTTCTAATCTCTGTACTGAGATTGTTGAATATTGTTCACCA 1796 Query 105034 AGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA 105093 ||||| ||||| ||||| || | || || ||||| | | ||| ||| |||| Sbjct 1795 -GATGAAGTTGCTGTATGTAATCTAGGGTCTATTGCTCTTAATAGATTTGTTGATACAGA 1737 Query 105094 GACAAAGACATTTGATT---ATGAAA---AACTCCACGAAGTTACGAAAACTGTCACCAA 105147 || | | || || || | |||||||| | ||| | |||| | | |||| Sbjct 1736 GAATGGTAAACCTGTTTTCAATTTCACTCAACTCCACTATGTTGCTAAAATTTTGACCAG 1677 Query 105148 AAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAA 105207 || |||| | |||| ||| |||| |||||| ||| | ||| |||||||| Sbjct 1676 GAATTTAAATAAGATTATCGATGTGAATTATTACCCAGTTCCGGAAGCTAAAAAATCTAA 1617 Query 105208 TATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTG 105267 |||||||||||| ||||| ||| | |||||||| ||| | || |||| |||||| ||| Sbjct 1616 TATGAGACACCGACCAATAGGTATTGGTGTTCAAGGTTTGGCAGATGCATTCATGCTTAT 1557 Query 105268 TCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCAT 105327 | | ||||| ||| |||| || ||| | ||| | || || || || || Sbjct 1556 GAGGTATCCATTTACTTCACCTCAAGCTAAAGAACTTAATAAGAAAATTTTCGAAACAAT 1497 Query 105328 GTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCATATGA 105384 || || | ||| | ||||| |||| |||||||| || ||||| || ||||| Sbjct 1496 TTACCATGGTGCTTTGGAGGC---TTCATGTGAGTTGGCTGAACGCGATGGACCCTATGA 1440 Query 105385 AACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA 105444 ||| | | | || || |||| || | || | ||||| | |||||||| |||| || | Sbjct 1439 AACTTATAAAGGATCGCCAGTATCTAAGGGAATTCTTCAGTATGATATGT-GGAATGTCA 1381 Query 105445 GACCAAGC--TTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTT 105502 | |||||| || | | |||||||| | | || ||| || | | ||| | Sbjct 1380 GGCCAAGCAATTTA-TGGGACTGGGATACATTGAAAGAAAATATTGCTAAACATGGTGTA 1322 Query 105503 CGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 105562 | || | | | | || |||||||| || ||||| || || ||||| | |||||| Sbjct 1321 AGGAATTCTTTGTTACTTGCCCCAATGCCTACTGCCTCAACTGCCCAAATTCTTGGTAAT 1262 Query 105563 AATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAG 105622 ||||||| ||||||| || || | || ||||| ||| | ||| | || || Sbjct 1261 AATGAATCGATTGAACCATATACATCAAATATCTACTCCAGACGTGTCCTTTCTGGTGAT 1202 Query 105623 TTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAG 105682 || ||||| || ||||| | | || | | || || | ||| | | Sbjct 1201 TTCCAAATTGTAAATCCACATCTTCTTAAAGATTTAATTGAACTTAACTTATGGACTGAA 1142 Query 105683 GA---TATGAAGGATCTCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATAT 105738 || ||||| || | || | ||| | ||| || || || ||||| || || Sbjct 1141 GAACTAATGAATGAAATAATAGCTGATA----ATGGATCTATCCAGAATATAAAAGAAAT 1086 Query 105739 TCCAAAT-GAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCA 105797 || ||| | | | ||||| || || || || ||||||||| ||| ||| | | Sbjct 1085 ACCCAATAGTATTAAAGAACTT-TATAAAACTGTATGGGAAATCTCCCAGAAAGATATTA 1027 Query 105798 TTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCA 105857 |||| ||||| || ||||||||| || ||||||||| ||| | | |||||| || Sbjct 1026 TTGAGATGGCTGCTGATCGTGGTGCTTTTATTGATCAATCACAATCTCTTAATCTC--CA 969 Query 105858 TG--GAAAGTCCAACGATGTCCAAGCTCT-CTTCTATGCACATGTACAGTTGGAAGAAGG 105914 || | || ||| | || | ||| | | ||||||||| | || ||||||| | Sbjct 968 TGTCGCTAGACCATC-ATATGCAATTTGTAGTTCTATGCATTTCCACGGTTGGAAACGTG 910 Query 105915 GTCTCAAAACGGGGATGTATTACCTCCGATCTAA 105948 | | |||||||||||||||||| | || |||| Sbjct 909 GATTAAAAACGGGGATGTATTACTTAAGAACTAA 876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583256520323880