Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4 143 3e-29 seq1 114 1e-20 >seq4 Length=2360143 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | || ||||| || || ||||||||||| ||| | | Sbjct 1036153 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036212 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||| | || ||||| ||||| ||||||||||| |||||||| Sbjct 1036213 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCAA 1036272 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | |||| || || || || ||||| ||||||| | || || | || |||||| Sbjct 1036273 CAAAGATTAATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAAT 1036332 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || || ||||| | || | |||||||| || || Sbjct 1036333 ATTCAAAAGGAGTCAACCCTTCACTTGGTTCTTCGTCTTCGTGGAGG 1036379 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| | || ||||| || || ||||||||||| ||| | | Sbjct 1035469 ATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035528 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||| | || ||||| |||||||||||||| || |||||||| Sbjct 1035529 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1035588 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | |||| || ||||| || ||||| ||||||| | || || | || |||||| Sbjct 1035589 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTATAAT 1035648 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || || ||||| | || | ||||| || || || Sbjct 1035649 ATTCAAAAGGAGTCAACCCTTCACTTGGTTCTTCGTCTCCGTGGAGG 1035695 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || ||||| || || ||||||||||| ||| | | Sbjct 1035925 ATGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035984 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||| | || ||||| |||||||| ||||| || |||||||| Sbjct 1035985 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAA 1036044 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | |||| || ||||| || ||||| ||||||| | || || | || |||||| Sbjct 1036045 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAAT 1036104 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || || ||||| | || | |||||||| || || Sbjct 1036105 ATTCAAAAGGAGTCAACCCTTCACTTGGTTCTTCGTCTTCGTGGAGG 1036151 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| | || ||||| || || ||||||||||| ||| | | Sbjct 1036609 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036668 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||| | || ||||| |||||||||||||| || |||||||| Sbjct 1036669 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1036728 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | |||| || ||||| || ||||| ||||||| | || || | || || || Sbjct 1036729 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAAC 1036788 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || || || ||||| | || | ||||| || || || Sbjct 1036789 ATCCAAAAAGAGTCAACCCTTCACTTGGTTCTTCGTCTCCGTGGAGG 1036835 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| | || ||||| || || ||||||||||| ||| | | Sbjct 1035697 ATGCAGATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035756 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||| | || ||||| |||||||||||||| || |||||||| Sbjct 1035757 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1035816 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || || || || || ||||| ||||||| | || || | || || || Sbjct 1035817 CAAAGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTACAAC 1035876 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || || || ||||| | || | |||||||| || || Sbjct 1035877 ATCCAAAAAGAGTCAACCCTTCACTTGGTTCTTCGTCTTCGTGGAGG 1035923 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || ||||| || || ||||||||||| ||| | | Sbjct 1036381 ATGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036440 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||| | || ||||| || ||||| ||||| || |||||||| Sbjct 1036441 GATACAATTGACAATGTCAAGTCAAAGATTCAAGATAAGGAAGGAATCCCACCAGACCAA 1036500 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || || || || || ||||| ||||||| | || || | || || || Sbjct 1036501 CAAAGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAAC 1036560 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || || || ||||| |||| | ||||| || || || Sbjct 1036561 ATCCAAAAAGAGTCAACCCTTCACTTAGTTCTTCGTCTCCGTGGAGG 1036607 >seq1 Length=5851329 Score = 114 bits (126), Expect = 1e-20 Identities = 280/420 (67%), Gaps = 17/420 (4%) Strand=Plus/Minus Query 24714 AAATTCAGATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCAGGAGACGCCA 24773 ||| ||||||||||||| || ||| || | | ||| || || || || | || Sbjct 4802398 AAAGTCAGATTTTATCAAGCTTCTACCTCAGAACTTTATGGAAAAGTTCAAGAAATCCCT 4802339 Query 24774 CAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAAGGTGTTCGCG 24833 || ||||| || ||||| ||||| ||||| || |||| || |||| ||| ||| Sbjct 4802338 CAAAAAGAGACAACACCATTCTATCCACGAAGTCCATATGCAGTAGCAAAATTGTACGCT 4802279 Query 24834 TACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAACGGAATTCTG 24893 || ||||||| || || || ||||| || |||| |||| ||| ||||| || ||| | Sbjct 4802278 TATTGGATAATAAAAAATTATCGTGAAGCATATGGAATATTTGCTTGCAATGGTATTTTA 4802219 Query 24894 TTCAACCATGAGTCGGAGCGTCGGGGACCTGAATTTGTTACACGAAAGATTA------CT 24947 ||||| ||||| || | | || | | ||||| ||| |||| |||| || Sbjct 4802218 TTCAATCATGAATCACCAAGAAGAGGTAATAATTTTGTAACAAGAAAAATTACAAGGGCT 4802159 Query 24948 CTTGGT--ATTGACCATTG--GATCAAGACAAGGGCACCTATTGAGCTGGGAAACCTAGA 25003 | | | | | | || | | |||||| | || |||| || || || | || Sbjct 4802158 GTAGCTAAAATCAGTATAGGTGTTCAAGAAA----CA-TTATT--ACTTGGTAATTTGGA 4802106 Query 25004 TGCCAAACGTGATTGGGGGCATGCAGCCGACTACGTCGACGCCATGTGGCGCATGCTCCA 25063 |||||||||||||||||| ||||| || || || || || |||||| | || || || Sbjct 4802105 TGCCAAACGTGATTGGGGTCATGCGAAGGAGTATGTTGAAGCTATGTGGAGAATCCTTCA 4802046 Query 25064 ACAGAATAAGCCAGAGGATTTTGTGATCGGCACCGGTCAGACGCATTCTATCAGGGATTT 25123 ||| || | ||||| || ||||| || | || ||| | || || | |||| ||||| Sbjct 4802045 ACATGATGAACCAGATGACTTTGTTATTGCTACAGGTAAAACTCAAAGTGTCAGAGATTT 4801986 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || | || || || || || ||||||||||||||| | Sbjct 5040550 ATGCAAATTTTCGTAAAAACTTTAACTGGAAAAACAATAACTCTTGAGGTTGAGGCCTCC 5040609 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| ||| | ||| |||| || || || || || || ||||| |||||||| Sbjct 5040610 GATACTGTTGATAATGTTAAGACTAAGATCCATGAAAAAGAAGGTATTCCACCAGACCAA 5040669 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 || || || |||||||| |||| Sbjct 5040670 CAACGGCTTATTTTTGCCGGTA 5040691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306215347440