Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4 120 2e-22 >seq4 Length=2360143 Score = 120 bits (132), Expect = 2e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || |||||||||||| |||||||| ||||| |||| Sbjct 1035686 AGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCAGAAAGAGTTCTT 1035627 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||||||||| || || || ||||| | |||||||| || || | ||||||| Sbjct 1035626 CCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCC 1035567 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| |||| || ||| | |||||| || ||| || || | || Sbjct 1035566 TTGTCT-TGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGT 1035508 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || || || || |||||||| |||||| Sbjct 1035507 GATGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCATG 1035468 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || || || |||||||||||| |||||||| ||| Sbjct 1036379 CCTCCACGAAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGGAA 1036320 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || ||||||||||| ||||| || ||||| | |||||||| || || Sbjct 1036319 AGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATTAATCTTTGTTGGTCTGGTGGA 1036260 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||| |||||| ||| |||| || ||| | |||||| || ||| || Sbjct 1036259 ATTCCCTCTTTGTCT-TGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTAC 1036201 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || || || || || ||||| |||||||| Sbjct 1036200 CTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 1036153 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || || || ||| ||||| ||||| ||||| ||| Sbjct 1035923 CCTCCACGAAGACGAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCGGAA 1035864 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || ||||||||||| ||||| || || || | |||||||| || || Sbjct 1035863 AGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGG 1035804 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| ||| |||| || ||| | |||||| || ||| || Sbjct 1035803 ATTCCCTCCTTGTCT-TGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTAC 1035745 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || || || || || |||||||||||||| Sbjct 1035744 CTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATCTGCAT 1035697 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || ||| ||||| ||||| ||||| ||||| |||| Sbjct 1036826 AGACGAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTT 1036767 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||||||||| || || || ||||| | |||||||| || || | ||||||| Sbjct 1036766 CCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCC 1036707 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| |||| || ||| | |||||| || ||| || || | || Sbjct 1036706 TTGTCT-TGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGT 1036648 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || || || |||||||||||||| Sbjct 1036647 GATGGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 1036609 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || || || |||||||||||| |||||||| ||| Sbjct 1036151 CCTCCACGAAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGGAA 1036092 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || ||||||||||| || || || ||||| | |||||||| || || Sbjct 1036091 AGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGG 1036032 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| ||| |||| || ||| | |||||| || ||| || Sbjct 1036031 ATTCCTTCCTTGTCT-TGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTAC 1035973 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || || || || || || || |||||||| Sbjct 1035972 CTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACGAAGATCTGCAT 1035925 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || || || || || ||| ||||| ||||| ||||| ||||| |||| Sbjct 1036598 AGACGAAGAACTAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTT 1036539 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||||||||| ||||| || || || | |||||||| || || | ||| ||| Sbjct 1036538 CCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCC 1036479 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| |||| || || | |||||| || ||| || || | || Sbjct 1036478 TTATCT-TGAATCTTTGACTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGT 1036420 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || || || || || |||||||| Sbjct 1036419 GATGGTTTTGCCTGTCAAAGTCTTGACGAAGATCTGCAT 1036381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727348404771