Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4 149 5e-31 seq1 96.9 3e-15 >seq4 Length=2360143 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| ||||| | || |||||||| || || || || Sbjct 1036153 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036212 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||| |||||||||||||| || || ||||| || ||| Sbjct 1036213 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCAA 1036272 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | |||||| |||||| | || || | || |||||||||| || Sbjct 1036273 CAAAGATTAATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAAT 1036332 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||| | || |||||| | ||| | || || || || Sbjct 1036333 ATTCAAAAGGAGTCAACCCTTCACTTGGTTCTTCGTCTTCGTGGAGGTAT 1036382 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| ||||| | || |||||||| || || || || Sbjct 1035697 ATGCAGATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035756 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||| ||||||||||| || || || ||||| || ||| Sbjct 1035757 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1035816 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | |||||| |||||| | || || | || |||||||||||||| Sbjct 1035817 CAAAGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTACAAC 1035876 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||| ||| | || |||||| | ||| | || || || || Sbjct 1035877 ATCCAAAAAGAGTCAACCCTTCACTTGGTTCTTCGTCTTCGTGGAGGTAT 1035926 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| ||||| | || |||||||| || || || || Sbjct 1035925 ATGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035984 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||| ||||||||||| ||||| || ||||| || ||| Sbjct 1035985 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAA 1036044 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | ||| || |||||| | || || | || |||||||||| || Sbjct 1036045 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAAT 1036104 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||| | || |||||| | ||| | || || || || Sbjct 1036105 ATTCAAAAGGAGTCAACCCTTCACTTGGTTCTTCGTCTTCGTGGAGGTAT 1036154 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || ||||| || ||| |||| ||||| | || |||||||| || || || | Sbjct 1035467 CCATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTT 1035526 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | || | ||||| | ||||| ||| ||||||||||| || || || ||||| || | Sbjct 1035527 CTGATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACC 1035586 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 |||| | ||||| | ||| || |||||| | || || | || |||| ||||| | Sbjct 1035587 AACAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTATA 1035646 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | |||||||||||||| ||| | || |||||| | ||| | || || || || Sbjct 1035647 ATATTCAAAAGGAGTCAACCCTTCACTTGGTTCTTCGTCTCCGTGGAGGTAT 1035698 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| ||||| | || |||||||| || || || || Sbjct 1036609 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036668 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||| ||||||||||| || || || ||||| || ||| Sbjct 1036669 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1036728 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | ||| || |||||| | || || | || |||| ||||||||| Sbjct 1036729 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAAC 1036788 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| ||||| ||| | || |||||| | ||| | || || || Sbjct 1036789 ATCCAAAAAGAGTCAACCCTTCACTTGGTTCTTCGTCTCCGTGGAGG 1036835 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| ||||| | || |||||||| || || || || Sbjct 1036381 ATGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036440 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||| |||||||| || ||||| || ||||| || ||| Sbjct 1036441 GATACAATTGACAATGTCAAGTCAAAGATTCAAGATAAGGAAGGAATCCCACCAGACCAA 1036500 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | |||||| |||||| | || || | || |||| ||||||||| Sbjct 1036501 CAAAGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAAC 1036560 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||| ||| | || || ||| | ||| | || || || || Sbjct 1036561 ATCCAAAAAGAGTCAACCCTTCACTTAGTTCTTCGTCTCCGTGGAGGTAT 1036610 >seq1 Length=5851329 Score = 96.9 bits (106), Expect = 3e-15 Identities = 120/163 (74%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 26966 TAAATTTTTTAATTT-ATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTA 27024 || ||| || ||||| | ||| ||||| || || || || ||||| || || ||| ||| Sbjct 5400283 TATATTATTAAATTTTAGACGAAATGCAAATTTTCGTTAAGACTCTTACTGGTAAGACTA 5400342 Query 27025 TTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACA 27084 | ||||||||||| || || || || | || || | || ||| ||||| ||||||| Sbjct 5400343 TCACTCTTGAAGTCGAGCCATCAGATACCATCGAAAATGTAAAAGCTAAAATCCAAGACA 5400402 Query 27085 AAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGG 27127 ||||||| || ||||| || ||||| ||| | || | ||||| Sbjct 5400403 AAGAAGGAATCCCACCAGACCAACAACGTCTTATTTTTGCCGG 5400445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915208786240