Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_028701.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq220 125 2e-24 >seq220 Length=3625 Score = 125 bits (138), Expect = 2e-24 Identities = 283/418 (68%), Gaps = 13/418 (3%) Strand=Plus/Minus Query 2151 TTGAACTGATCGCCAGTCCAGAAAGGATAGGCTTCATGTTCTTCA--CTGGAAGGCGTCG 2208 |||||| | | || | |||||| ||||| || ||| ||| ||||| ||||| | Sbjct 3016 TTGAACAGCGCACCGGACCAGAACGGATAAGCAC--TGTGGGTCAGGCTGGATGGCGTGG 2959 Query 2209 AAAAGTAGGTGCGGCGCAGTCCTTTTTGTG--TCGCCATGCCTGCGGCCACTGAGCGCAG 2266 |||| ||||| | ||| | |||||||| | ||||| || | |||||| |||||| Sbjct 2958 AAAAATAGGTTTGTCGCCAT--TTTTTGTGAATAGCCATACCGGAAGCCACTTTGCGCAG 2901 Query 2267 TTTGATGAAATTACTG-ATCCAGAAGGCTTCATCCAGGTACAGATCGCCGGTGTAGCTCT 2325 || || |||| | | |||||||| |||||||| ||||||| |||||||||||||| Sbjct 2900 TTCC-TGGAATTTCGGTATCCAGAAATACTCATCCAGATACAGATTGCCGGTGTAGCTCT 2842 Query 2326 GGGCCGTCGCGGCGGAGGTGCCGAGAAAATACAGGATCGCACCGTTGCTTAACTCAATGG 2385 |||| || ||| ||||||||| || || || | || ||||| | | | || | Sbjct 2841 GGGCGGTGCGGGCATTGGTGCCGAGGAAGTAAAGCGTGGCTCCGTTAGGAAGCACCATCG 2782 Query 2386 CATCACCGCCCTTAAGTTCTACTCCTATTTCCCTTGCCAGCTTCTGAATGAATCGCTTGA 2445 || |||| || || || || | | ||| | || | | ||| | |||| | Sbjct 2781 GAT---CGCCTTTCAGCTCCACCTCGACTTCTTTGGCGAAGTCGATGATGTACTGCTTAA 2725 Query 2446 ACTGGAACGCCTGGGCGCGGCTGGCTGACAGGAATATCTGGTTATTTCCGGTTTCCAGCG 2505 | | ||||| || ||||| || ||||| ||||||||| |||||| ||| | Sbjct 2724 AAACGTGAGCCTGTGCCTTACTGGCAGAAAGGAAAATCTGGTTACGTCCGGTAAGCAGGG 2665 Query 2506 CACGCAACAGCGCTTCGCGGGCAAAGTACCAAGTGGCACCAATTTGGCGCGATTTGAG 2563 | | ||| ||||| ||||||||||| | || || || || ||||| || || || Sbjct 2664 CGTCAATCAGGGCTTCACGGGCAAAGTAAAAGGTCGCGCCGATCTGGCGTGACTTCAG 2607 Score = 95.1 bits (104), Expect = 3e-15 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 1692 TCCATGCCGCGTAACTGGTGGCGCTCTACCACGCGGAACTTACCACCCGGCACGGCTGGC 1751 ||||| ||||| ||||||| ||||| | | |||||||||||| ||||||||||||||| Sbjct 3469 TCCATCCCGCGCCACTGGTGACGCTCAAGAATGCGGAACTTACCGCCCGGCACGGCTGGC 3410 Query 1752 GGGGCCAGCACAACCAGCCCGGCGCTGTCGCCTTT 1786 || |||| ||| || |||||||||||||| || Sbjct 3409 GGTGCCACCACCACGCATCCGGCGCTGTCGCCGTT 3375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107106453395874