Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq220 448 1e-121 >seq220 Length=3625 Score = 448 bits (496), Expect = 1e-121 Identities = 883/1293 (68%), Gaps = 35/1293 (3%) Strand=Plus/Plus Query 19573 CCAGCTCATCATCAAACCGCAGAAAACCGGCGGTGACTTCAAGGAAATTGACCTGCTGGG 19632 ||||||||| || || ||| ||| || || ||||| |||||||||||||||| Sbjct 2318 CCAGCTCATTATGAAGGAGCACAAAGAAGGGAAAGATTTCAAAGAAATTGACCTGCTGGC 2377 Query 19633 ACGTCAGATTGAACGACTGGCACGGGTCAACCGCTACAGTCAGACCGGCAACGAGGCAGA 19692 || ||| || || | || ||| || | | | | ||||||||| || || Sbjct 2378 GCGCCAGTCGGAGCGCCACGCGCGGATCGGCAAGTTTAACAATGGCGGCAACGAAGCCGA 2437 Query 19693 CCTTAATCCGAACGTCGCTAACCGCAACAAAGGCGGGCGTCGCAAACCGAAAAAGAATTT 19752 | | || || |||||||| ||||||||||||||| ||| || ||||| |||||||| | Sbjct 2438 CTTAAACCCTAACGTCGCCAACCGCAACAAAGGCCCGCGCCGTCAACCGGAAAAGAATGT 2497 Query 19753 TTTCAGTGACGAGGCCATCGAAAAGCTGGAGCAGATTTTCT-TTGAGCAGTCTTTCGAAT 19811 |||| || || || || |||||||| |||||||| || | | || | | | Sbjct 2498 CTTCACCGATGAACAGATTGAGAAGCTGGAAGAGATTTTCCATTCCTCCATGTT-CAACT 2556 Query 19812 ATCAGTTGCACTGGTATCGCGCCGGGCTTGAGCACCGCATCCGCGATATCCTGAAATCCC 19871 | ||| ||||||| ||||| ||||||||||| | | ||||| || | Sbjct 2557 ACCAGCGCCACTGGTGGGAAGCCGGAAAAACCAACCGCATCCGCAACCTGCTGAAGTCAC 2616 Query 19872 GCCAGATTGGCGCGACGTTTTATTTTTCCCGCGAGGCGCTGCTGCGCGCCCTGAAAACCG 19931 ||||||| |||||||| ||||| ||| |||| || || ||| | ||||||| |||| Sbjct 2617 GCCAGATCGGCGCGACCTTTTACTTTGCCCGTGAAGCCCTGATTGACGCCCTGCTTACCG 2676 Query 19932 GTCATAACCAGATTTTTCTGTCGGCCAGTAAAACGCAGGCGTATGTGTTCCGCGAATACA 19991 | | |||||||||||| || || |||||||| | ||||| | || || | |||| Sbjct 2677 GACGTAACCAGATTTTCCTTTCTGCCAGTAAGGCACAGGCTCACGTTTTTAAGCAGTACA 2736 Query 19992 TCATCGCCTTTGCCCGGCTGGTTGACGTTGACCTGACCGGTGACCCGATTGTCCTGGGCA 20051 |||||| ||| ||| || || || || |||| || || ||||| || || Sbjct 2737 TCATCGACTTCGCCAAAGAAGTCGAGGTGGAGCTGAAAGGCGATCCGATGGTGCTTCC-- 2794 Query 20052 ATAACGGCGCAAAACTGATTTTTCTCGGCACCAACTCCAACACCGCACAGAGCCATAACG 20111 |||||| || | || || ||||||||||| || |||||| |||||| | | || Sbjct 2795 -TAACGGAGCCACGCTTTACTTCCTCGGCACCAATGCCCGCACCGCCCAGAGCTACACCG 2853 Query 20112 GCGACCTGTACGTCGACGAGATTTTCTGGATCCCGAATTTTCAGGTACTGCGTAAGGTGG 20171 || | ||||| | || ||| ||||||||| ||||| || |||| |||||| || |||| Sbjct 2854 GCAATCTGTATCTGGATGAGTATTTCTGGATACCGAAATTCCAGGAACTGCGCAAAGTGG 2913 Query 20172 CATCAGGTATGGCC--TCACAGAGTCACCTGCGCTCGACCTATTTCTCCACCCCGTCCAC 20229 | || |||||||| ||||| | | ||| |||||||| ||||| || |||| Sbjct 2914 CTTCCGGTATGGCTATTCACAAAA--AATGGCGACAAACCTATTTTTCCACGCCATCCAG 2971 Query 20230 GCTGGCGCACGACGCCTACCCGTTCTGGTCGGGTGAACTGTTCAACCGGGGACGCGCCAG 20289 ||| | ||| || || ||||||||||| |||| ||||||||||| || ||| || Sbjct 2972 CCTGACCCACAGTGCTTATCCGTTCTGGTCCGGTGCGCTGTTCAACCGTGGGCGCAACAA 3031 Query 20290 CGCCGCCGAACGCGTGGAAATCGACGTCAGTCATAACGCCCTTGCCGGAGGTCTTCTCTG 20349 |||| | ||||| |||||| | || | | || ||| || || || || Sbjct 3032 AGCCGATAAG---GTGGACATCGACCTGTCCCACAGCAATCTGGCCCCCGGCCTGCTGTG 3088 Query 20350 TGCGGACGGCCAGTGGCGGCAGATTGTCACCATTGAGGACGCCCTGAAAGGCGGCTGCAC 20409 || ||||| || | || ||||| |||||| | || || || || ||||| || | Sbjct 3089 CGCAGACGGGCAATACCGCCAGATAGTCACCGTGGAAGATGCAGTGCGCGGCGGATGTAA 3148 Query 20410 GCTGTTCGACATTGAGCAGCT-CAAACGTGAAAACAGCGCCGACGATTTTAAAAACCTGT 20468 || |||||| |||| ||| | | | | || ||||| | | ||| | | |||||| Sbjct 3149 CCTTTTCGACCTTGACCAGTTGCGCATG-GAGTACAGCCCGGCCGAATACCAGAACCTGC 3207 Query 20469 TCATGTGTGAATTTGTTGACGACAAGGCGTCGGTGTTCCCGTTCGAGGAGCTGCAACGTT 20528 | ||||| || ||||| ||||| ||||| || |||||| || |||||||| | Sbjct 3208 TGATGTGCGAGTTTGTGGACGATCTCGCGTCCGTATTCCCGCTCAGCGAGCTGCAGGCGT 3267 Query 20529 GCATGGTCGACACGCTGG-AAGAATGGGAAGACT---ATGCGCCG--TTTGCCGCAAATC 20582 ||||||| |||| ||||| ||| ||| |||| |||| | | | ||| || | Sbjct 3268 GCATGGTGGACA-GCTGGGAAGTCTGGACCGACTTTCATGCACTGGCTCTGC-GC----C 3321 Query 20583 CGTTCGGCTCCCGCCCGGTATGGATTGGTTACGACCCGTCACACCGT---------GGCG 20633 |||| |||| ||| || ||||| ||||| |||||| | | || |||| Sbjct 3322 CGTTTGGCTGGCGCGAAGTGTGGATCGGTTATGACCCGGCGAAAGGTACGCAAAACGGCG 3381 Query 20634 ACAGCGCCGGATGCGTGGTACTGGCACCGCCGGTGGTGGCCGGTGGCAAATTCAGAATAC 20693 ||||||||||||||||||| |||||||||| | ||| | || || || ||| | || | Sbjct 3382 ACAGCGCCGGATGCGTGGTGGTGGCACCGCCAGCCGTGCCGGGCGGTAAGTTCCGCATTC 3441 Query 20694 TTGAGCGTCACCAGTGGAAAGGCATGGACTTTGCCACCCAGGCGGAATCCATCCGCAAAC 20753 ||||||||||||||||| || |||||||| | ||||||| || ||||| |||| Sbjct 3442 TTGAGCGTCACCAGTGGCGCGGGATGGACTTCCGCGCCCAGGCTGACGCCATCAAAAAAC 3501 Query 20754 TCACCGAAAAATATAACGTTGAATACATCGGGATTGATGCCACCGGCCTCGGTGTCGGCG 20813 | |||||| | || ||||| || ||||| || || | |||||| | ||| ||| | Sbjct 3502 TGACCGAACAGTACAACGTGACCTATATCGGCATCGACTCGACCGGCGTTGGTCACGGGG 3561 Query 20814 TGTTCCAGCTCGTGCGCTCGTTCTATCCCGCCG 20846 | | | || |||| |||| | ||| |||| Sbjct 3562 TTTACGAGAACGTGAAAGCGTTTTTTCCTGCCG 3594 Score = 354 bits (392), Expect = 2e-93 Identities = 536/757 (71%), Gaps = 28/757 (4%) Strand=Plus/Plus Query 17188 GCTGTGCGGGACTCG---TCATCGGTTACGCTCCCGGCTCTGCGGTCGCTTTAGCCAGTG 17244 || ||||||||||| |||| ||||||||||| | ||||||| || | Sbjct 45 GCCGTGCGGGACTCAGGCTCATGGGTTACGCTCCGGCTTCTGCGG-CG-----------G 92 Query 17245 TGGAGAAATCACCGACCTTAATTTTTTCCACCAGACAACCGGCGGCGTAGTCCTCCACCA 17304 | ||| ||||| | || || ||||||||||| || | ||||||||| |||| Sbjct 93 CGCTGAAGTCACCAATCTGGATGTTTTCCACCAGTGCTGCGCAGCGGTAGTCCTCAACCA 152 Query 17305 CGTAATCAATGTTCATTGACTCGTAGTTCTCCACGCGGTCGAGTTTCGGGTTTTCCTCAA 17364 | || | ||| | || || |||| || | ||||| |||||||||| || || Sbjct 153 CATAGGCTTCGTTAACGGATTCAAAGTTTTCAATCCGGTCACGTTTCGGGTTGTCGATAA 212 Query 17365 TCACGCGGCGATGGCTGTCATCCATGTAGTAGATGGACAGGTTTTCCAGCTTCGTGATGA 17424 | ||||| || |||| ||| |||| ||||||||||| ||||| ||||| | Sbjct 213 CCGAACGGCGGCGGGTGTCCTCCTGCCAGTAAATGGACAGGTTATCCAGACGGGTGATCA 272 Query 17425 GCATCGCATCCGCCGGGAAGTACGGGACGCGTACCGCTGGCAGGTTGCCGATGCGTTTCT 17484 ||| ||||| || ||||||| |||| | || || || ||||| || |||||||||| Sbjct 273 GCAGCGCATTCGGCGGGAAGAACGGCGCACGCACGGCCTGCAGGCCACCCATGCGTTTCT 332 Query 17485 GGCTGATGATGACGTCAGCGGCCAGCATTTCGCTGTTGTCCTGCTCCTTGTTGACGATGG 17544 | |||||||| | || || ||||| |||| ||||| ||||| || |||||||| | | Sbjct 333 GACTGATGATCATATCGGCAGCCAGTTTTTCACTGTTTTCCTGGTCTTTGTTGACCAGCG 392 Query 17545 GAAAATACTTGTCCGCCAGTAGCTGACGTCCCACAATCACCACAAGGTCAGGGTCTTCCT 17604 | ||||||||||| | ||| |||| ||| || ||||||||| || || || |||| Sbjct 393 GGAAATACTTGTCAGACAGCAGCTCACGACCACAAATCACCACCAGATCGTCATCGTCCT 452 Query 17605 G--ATACCACGGCTCAATCAGGTTGTTGGTCGCATCCATCACCAGTGCATCAAGGCTGGC 17662 | | |||||| || || || | ||| ||||||||||||| || || ||| |||| Sbjct 453 GGTAGACCACG--TCGATAAGCTCATTGACGGCATCCATCACCACGGCGTCCAGGTTGGC 510 Query 17663 ATAATCACCGCCCTTACCCACGCGGATGACCTCA---GAGGTGGTGTGCCCTTCCTCGTC 17719 ||| || || || || || || | ||| || | ||||| | || | ||| Sbjct 511 ATATTCTCCACCTTTCCCGAC---TTTCACCGCACCCGGTGTGGTTTCACC--GCCCGT- 564 Query 17720 AGTGACCTTGCTCATCACGCGCGCCGGGGCTTCATTGCGGTATTTCTGCAGCCAGCCGAC 17779 ||| ||| ||| ||| | |||| || || | ||| ||||||||||||||| Sbjct 565 GGTGGTGCTGCCCATGACGTGATCCGGTGCATCCTCACGGATTTTCTGCAGCCAGCCTTT 624 Query 17780 CGCCACATCCTGCAGCATCGGATTGCTGCTGCGGTCAGAGGTTTCGGCACGCCTCACGCC 17839 |||||||||||||| ||| || ||| |||| |||||||| |||||| ||||||| Sbjct 625 GTTCACATCCTGCAGCAGCGGGTTTTCGCTACGGTTAGAGGTTTTCGCACGCTTCACGCC 684 Query 17840 GTTAAAACCGGCCATGATTAAATCAAGGGACTGGCGTTTGATAATGGCGTTACGGACACG 17899 |||||| ||| |||||| || || | ||| ||||| | ||||||||||||| ||| Sbjct 685 GTTAAAGCCGATCATGATGCGGTCCAGCGCCTGACGTTTCACGATGGCGTTACGGATACG 744 Query 17900 GAGCTGGAAATCCTGATAACGCGCCCACAGATCCAGC 17936 ||||||||||||||||||||||||||||| |||||| Sbjct 745 CAGCTGGAAATCCTGATAACGCGCCCACAGGTCCAGC 781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104437671999078