Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq220 453 2e-123 >seq220 Length=3625 Score = 453 bits (502), Expect = 2e-123 Identities = 864/1261 (69%), Gaps = 35/1261 (3%) Strand=Plus/Minus Query 8680 ACGCCGACACCGAGGCCGGTGGCATCAATTCCGATGTATTCGACGTTGTATTTTTCGGTG 8739 || ||| ||| | |||||| | || || ||||| || |||||||| | |||||| Sbjct 3562 ACCCCGTGACCAACGCCGGTCGAGTCGATGCCGATATAGGTCACGTTGTACTGTTCGGTC 3503 Query 8740 AGTTTGCGGATGGATTCAGCCTGGGTGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCA 8799 ||||| ||||| |||||||||| | |||||||| || |||||||||||||||| Sbjct 3502 AGTTTTTTGATGGCGTCAGCCTGGGCGCGGAAGTCCATCCCGCGCCACTGGTGACGCTCA 3443 Query 8800 AGTATTCTGAATTTGCCACCGGCCACCACCGGCGGTGCCAGCACCACGCATCCGGCACTG 8859 || || | ||| || || || | ||| | |||||||||| ||||||||||||||| ||| Sbjct 3442 AGAATGCGGAACTTACCGCCCGGCACGGCTGGCGGTGCCACCACCACGCATCCGGCGCTG 3383 Query 8860 TCGCC---------ACGGTGTGACGGGTCGTAACCAATCCAGACCGGGCGGGAGCCGAAC 8910 ||||| || | | |||||| ||||| ||||| || ||| |||| ||| Sbjct 3382 TCGCCGTTTTGCGTACCTTTCGCCGGGTCATAACCGATCCACACTTCGCGCCAGCCAAAC 3323 Query 8911 GGATTCGCGGCAAACGGCGCAT---AGTCTTCCCATTCTT-CCAGCGTGTCGACCATGCA 8966 || ||| | | | | |||| |||| ||| ||| ||||| |||| |||||||| Sbjct 3322 GG--GCGCAG-AGCCAGTGCATGAAAGTCGGTCCAGACTTCCCAGC-TGTCCACCATGCA 3267 Query 8967 GCGTTGCAGCTCCTCGAACGGGAACACCGACGCCTTGTCGTCAACAAATTCACACATGAA 9026 |||||||| || |||||| || ||||| ||||| ||||| || ||||| | Sbjct 3266 CGCCTGCAGCTCGCTGAGCGGGAATACGGACGCGAGATCGTCCACAAACTCGCACATCAG 3207 Query 9027 CAGGTTTTTAAAATCGTCGGCGCTGTTTTC---GCGTTTAAGCTGCTCAATGTCGAACAG 9083 |||||| | | ||| | | ||||| || ||| | ||| |||| |||||| || Sbjct 3206 CAGGTTCTGGTATTCGGCCGGGCTGTACTCCATGCG---CAACTGGTCAAGGTCGAAAAG 3150 Query 9084 CGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCGCCACTGACCGTCCGC 9143 | || || || || || || || | |||||| ||||| || | || ||||| || Sbjct 3149 GTTACATCCGCCGCGCACTGCATCTTCCACGGTGACTATCTGGCGGTATTGCCCGTCTGC 3090 Query 9144 ACAGAGAAGCCCACCGGCAAGAGCGTTATGACTGACGTCGATTTCCACGCGTTCGGCGGC 9203 || || || || ||| ||| | | || | |||||| ||||| | |||| Sbjct 3089 GCACAGCAGGCCGGGGGCCAGATTGCTGTGGGACAGGTCGATGTCCAC---CTTATCGGC 3033 Query 9204 GCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCAGAACGGGTAGGCGTCGTGCGCCAG 9263 || ||| || ||||||||||| |||| ||||||||||| || || ||| | ||| Sbjct 3032 TTTGTTGCGCCCACGGTTGAACAGCGCACCGGACCAGAACGGATAAGCACTGTGGGTCAG 2973 Query 9264 CGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGACTCTGTGA--GGCCATACCTGAT 9321 |||| || ||||| |||||||| ||| | | ||||| |||||||| || Sbjct 2972 GCTGGATGGCGTGGAAAAATAGGTTTGTCGCCATT--TTTTGTGAATAGCCATACCGGAA 2915 Query 9322 GCCACCTTACGCAGTACCTGAAAATTCGGTATCCAGAAAATCTCGTCGACGTACAGGTCG 9381 ||||| || |||||| |||| || ||||||||||||||| ||| || | ||||| | | Sbjct 2914 GCCACTTTGCGCAGTTCCTGGAATTTCGGTATCCAGAAATACTCATCCAGATACAGATTG 2855 Query 9382 CCGTTATGGCTCTGCGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGTTTTGCGCCGTTA 9441 ||| | | |||||| |||||| || ||||||||||| || || | || |||||| Sbjct 2854 CCGGTGTAGCTCTGGGCGGTGCGGGCATTGGTGCCGAGGAAGTAAAGCGTGGCTCCGTTA 2795 Query 9442 TTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAACCAGCCGGGCAAAGGCGATG 9501 || || ||||| || || |||| || || || || ||| ||| ||||| Sbjct 2794 ---GGAAGCACCATCGGATCGCCTTTCAGCTCCACCTCGACTTCTTTGGCGAAGTCGATG 2738 Query 9502 ATGTATTCGCGGAACACATACGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGA 9561 ||||| | || || | ||||| | |||||||| || || |||||||||||| | Sbjct 2737 ATGTACTGCTTAAAAACGTGAGCCTGTGCCTTACTGGCAGAAAGGAAAATCTGGTTACGT 2678 Query 9562 CCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCGCCAATCTGG 9621 ||||| ||||||| | ||| || || |||| ||| ||||| |||||||| |||||| Sbjct 2677 CCGGTAAGCAGGGCGTCAATCAGGGCTTCACGGGCAAAGTAAAAGGTCGCGCCGATCTGG 2618 Query 9622 CGGGATTTCAGGATATCGCGGATGCGGTGCTCAAGCCCGGCGCGATACCAGTGCAACTGA 9681 || || ||||| | | ||||||||||| ||||| ||||||| ||| Sbjct 2617 CGTGACTTCAGCAGGTTGCGGATGCGGTTGGTTTTTCCGGCTTCCCACCAGTGGCGCTGG 2558 Query 9682 TATTCGAAAGACTGCTCAA-AGAAAATCTGCTCCAGCTTTTCGATAGCCTCGTCACTGAA 9740 || | | || | | || |||||||| |||||||| || || || || |||| Sbjct 2557 TAGTTG-AACATGGAGGAATGGAAAATCTCTTCCAGCTTCTCAATCTGTTCATCGGTGAA 2499 Query 9741 AAAATTCTTTTTCGGTTTGCGCCGCCCGCCTTTGTTGCGGTTAGCGATGTTCGGATTAAG 9800 | |||||||| ||||| || ||| ||||||||||||||| |||| ||| || || | Sbjct 2498 GACATTCTTTTCCGGTTGACGGCGCGGGCCTTTGTTGCGGTTGGCGACGTTAGGGTTTAA 2439 Query 9801 GTCTGCCTCGTTGCCGGTCTGGCTGTAGCGGTTTACCCGTGCCAGTCGTTCAATCTGGCG 9860 ||| || ||||||||| | | | | | | ||| || | || || |||||| Sbjct 2438 GTCGGCTTCGTTGCCGCCATTGTTAAACTTGCCGATCCGCGCGTGGCGCTCCGACTGGCG 2379 Query 9861 TCCGAGCAGGTCAATTTCCTTGAAGTCACCGCCGGTTTTCTGCGGTTTGATGATGAGCTG 9920 | |||||||||||||| ||||| || || ||| ||| || || |||||||| Sbjct 2378 CGCCAGCAGGTCAATTTCTTTGAAATCTTTCCCTTCTTTGTGCTCCTTCATAATGAGCTG 2319 Query 9921 G 9921 | Sbjct 2318 G 2318 Score = 363 bits (402), Expect = 3e-96 Identities = 537/757 (71%), Gaps = 28/757 (4%) Strand=Plus/Minus Query 11558 GCTGGACCTGTGGGCGCGTTATCAGGATTTCCAGCTCCGTATCCGTAACGCCATTATCAA 11617 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || Sbjct 781 GCTGGACCTGTGGGCGCGTTATCAGGATTTCCAGCTGCGTATCCGTAACGCCATCGTGAA 722 Query 11618 ACGTCAGTCCCTTGATTTAATCATGGCCGGTTTTAACGGCGTGAAGCGTGCCGAAACCTC 11677 ||||||| | || || |||||| ||| |||||||||||||||||||| ||||||| Sbjct 721 ACGTCAGGCGCTGGACCGCATCATGATCGGCTTTAACGGCGTGAAGCGTGCGAAAACCTC 662 Query 11678 TGACCGCAGCAGCAATCCGATGCTGCAGGATGTGGCGGTCGGCTGGCTGCAGAAATACCG 11737 | |||| ||| || ||| |||||||||||||| ||||||||||||||| ||| Sbjct 661 TAACCGTAGCGAAAACCCGCTGCTGCAGGATGTGAACAAAGGCTGGCTGCAGAAAATCCG 602 Query 11738 CAATGAAGCCCCGGCGCGCGTGATG---AGCAAGGTCACTGACGAGGAAGGCCGCACGAC 11794 | || || |||| | ||| ||| |||| ||| | || ||| || ||| | Sbjct 601 TGAGGATGCACCGGATCACGTCATGGGCAGCACCACCACGGGCGGTGAAA-CCACAC--C 545 Query 11795 CTCTGAGGTTATCCGCGTGGGTAAGGGCGGTGATTATGCCAGCCTCGATGCACTGGTGAT 11854 || ||| | || || || || || || ||||||| ||| || || ||||||| Sbjct 544 GGGTGCGGTGAAA---GTCGGGAAAGGTGGAGAATATGCCAACCTGGACGCCGTGGTGAT 488 Query 11855 GGATGCAACCAACAACCTGATTGAACCGTGGTAT--CAGGAAGACCCTGACCTTGTGGTG 11912 |||||| ||| | || || || |||||| | ||||| || || || |||||| Sbjct 487 GGATGCCGTCAATGAGCTTATCGA--CGTGGTCTACCAGGACGATGACGATCTGGTGGTG 430 Query 11913 ATTGTGGGACGTCAGCTACTGGCGGACAAGTATTTCCCCATCGTTAACAAGGAGCAGGAC 11972 ||| || ||| |||| ||| | |||||||||||||| | || ||||| || ||||| Sbjct 429 ATTTGTGGTCGTGAGCTGCTGTCTGACAAGTATTTCCCGCTGGTCAACAAAGACCAGGAA 370 Query 11973 AACAGCGAGATGCTGGCCGCTGACGTCATTATCAGCCAGAAACGCATCGGCAACCTGCCG 12032 ||||| || | ||||| || || | || ||||| ||||||||||| || ||||| | Sbjct 369 AACAGTGAAAAACTGGCTGCCGATATGATCATCAGTCAGAAACGCATGGGTGGCCTGCAG 310 Query 12033 GCGGTACGCGTCCCGTACTTCCCGGCGGATGCGATGCTCATCACGAAGCTGGAAAACCTG 12092 || || || | |||| ||||||| || ||||| |||| ||||| ||||| |||||| Sbjct 309 GCCGTGCGTGCGCCGTTCTTCCCGCCGAATGCGCTGCTGATCACCCGTCTGGATAACCTG 250 Query 12093 TCCATCTACTACATGGATGACAGCCATCGCCGCGTGATTGAGGAAAACCCGAAACTCGAC 12152 ||||| |||| ||| |||| || ||||| | || || |||||||||| ||| Sbjct 249 TCCATTTACTGGCAGGAGGACACCCGCCGCCGTTCGGTTATCGACAACCCGAAACGTGAC 190 Query 12153 CGCGTGGAGAACTACGAGTCAATGAACATTGATTACGTGGTGGAAGACTACGCCGCCGGT 12212 || | || |||| || || | ||| | || ||||| || |||||| | || Sbjct 189 CGGATTGAAAACTTTGAATCCGTTAACGAAGCCTATGTGGTTGAGGACTACCGCTGCGCA 130 Query 12213 TGTCTGGTGGAAAAAATTAAGGTCGGTGATTTCTCCACCCCGGCTAAGGCGACCGCAGAG 12272 ||||||||||| || || | ||||| ||| | || ||||||| Sbjct 129 GCACTGGTGGAAAACATCCAGATTGGTGACTTC------------AGCGCCGCCGCAGAA 82 Query 12273 CCGGGAGCGTAACCGATGA---CGAGTCCCGCACAGC 12306 | ||||||||||| |||| ||||||||||| || Sbjct 81 GCCGGAGCGTAACCCATGAGCCTGAGTCCCGCACGGC 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93436148687106