Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq220 414 2e-111 >seq220 Length=3625 Score = 414 bits (458), Expect = 2e-111 Identities = 828/1222 (68%), Gaps = 25/1222 (2%) Strand=Plus/Minus Query 1568 ACACCGAGACCGAGGCCTGTTGCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTG 1627 || ||| |||| | ||| || | ||| |||||||| || |||||||| | || || Sbjct 3562 ACCCCGTGACCAACGCCGGTCGAGTCGATGCCGATATAGGTCACGTTGTACTGTTCGGTC 3503 Query 1628 AGCCTGCGGATGGCTTCTGCCTGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCC 1687 || | |||||| || ||||| ||| |||||||| || ||||||||||||||| Sbjct 3502 AGTTTTTTGATGGCGTCAGCCTGGGCGCGGAAGTCCATCCCGCGCCACTGGTGACGCTCA 3443 Query 1688 AGCATGCGAAACTTGCCACCCGAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTG 1747 || ||||| ||||| || |||| || | ||||| || | || || |||||||| ||| Sbjct 3442 AGAATGCGGAACTTACCGCCCGGCACGGCTGGCGGTGCCACCACCACGCATCCGGCGCTG 3383 Query 1748 TCGCCGGTGTGGGA---------CGGGTCGTAGCCAATCCAGACCGGGCGCGAGCCGAAT 1798 |||||| | || | |||||| || || ||||| || |||| |||| || Sbjct 3382 TCGCCGTTTTGCGTACCTTTCGCCGGGTCATAACCGATCCACACTTCGCGCCAGCCAAAC 3323 Query 1799 GGATGGTCGGCGAACGGGGCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGC 1858 || | || | | ||||| ||| |||| ||| |||||||| | Sbjct 3322 GGGCGCAGAGCCAGTGCATGAAAGTCGGTCCAGACTTCCCAGCTGTCCACCATGCACGCC 3263 Query 1859 TGCAGCTCCTCGAACGGGAATACCGATGCCTTATCGTCGACAAACTCGCACATAAACAGG 1918 |||||||| || ||||||||| || || |||||| |||||||||||||| | |||| Sbjct 3262 TGCAGCTCGCTGAGCGGGAATACGGACGCGAGATCGTCCACAAACTCGCACATCAGCAGG 3203 Query 1919 TTCTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTGCAG 1978 |||| | || | |||| || | | |||||| |||||||| ||| | || Sbjct 3202 TTCTGGTATTCGGCCGGGCTGTACTCCATGCGCAACTGGTCAAGGTCGAAAAGGTTACAT 3143 Query 1979 CCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAAGA 2038 || ||| | || || || | ||||| ||||| || | || ||||| ||||| || Sbjct 3142 CCGCCGCGCACTGCATCTTCCACGGTGACTATCTGGCGGTATTGCCCGTCTGCGCACAGC 3083 Query 2039 AGCCCACCGGCGAGCGCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCGGCACTGGCG 2098 || || ||| || |||||| | |||||| || | | | |||| || | Sbjct 3082 AGGCCGGGGGCCAGATTGCTGTGGGACAGGTCGATGTCCACC---TTATCGGCTTTGTTG 3026 Query 2099 CGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGGTAAGCGCCGTGCGCCAGCGTGGAA 2158 ||||| |||||||||| | || |||||||| || ||||| | ||| | ||| |||| Sbjct 3025 CGCCCACGGTTGAACAGCGCACCGGACCAGAACGGATAAGCACTGTGGGTCAGGCTGGAT 2966 Query 2159 GGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTTTGCGAG--GCCATGCCCGATGCGACTT 2216 || || ||||| || ||| ||| | ||||| || ||||| || || || |||| Sbjct 2965 GGCGTGGAAAAATAGGTTTGTCGCCATT--TTTTGTGAATAGCCATACCGGAAGCCACTT 2908 Query 2217 TGCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTAT 2276 ||||||| | ||| || ||||| |||||||| ||||| | |||||| | |||| | | Sbjct 2907 TGCGCAGTTCCTGGAATTTCGGTATCCAGAAATACTCATCCAGATACAGATTGCCGGTGT 2848 Query 2277 GGCTCTGTGCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGA 2336 |||||| |||||| || |||||||||||| || ||| | || ||||| || Sbjct 2847 AGCTCTGGGCGGTGCGGGCATTGGTGCCGAGGAAGTAAAGCGTGGCTCCGTTAG----GA 2792 Query 2337 TG-ACAATCGGGTCGCCGGTCAGGTCGACGTCAACCAGTCGCGCAAACTGGATGATGTAT 2395 | || ||||| ||||| |||| || || || || | || || | ||||||||| Sbjct 2791 AGCACCATCGGATCGCCTTTCAGCTCCACCTCGACTTCTTTGGCGAAGTCGATGATGTAC 2732 Query 2396 TCCCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTC 2455 | | || |||| |||||| | |||||||| || || |||||||||||| | ||||| Sbjct 2731 TGCTTAAAAACGTGAGCCTGTGCCTTACTGGCAGAAAGGAAAATCTGGTTACGTCCGGTA 2672 Query 2456 TTGAGCGCGCGCAGCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGAT 2515 || ||| | ||| || || |||| |||||| || |||||||| |||||||| || Sbjct 2671 AGCAGGGCGTCAATCAGGGCTTCACGGGCAAAGTAAAAGGTCGCGCCGATCTGGCGTGAC 2612 Query 2516 TTGAGAATATCGCGAATACGGTGCGCCAGTCCTGCCCGGTACCACTGCAACTGGTATTCG 2575 || || | | ||| || |||| | ||| || |||| || |||||| | | Sbjct 2611 TTCAGCAGGTTGCGGATGCGGTTGGTTTTTCCGGCTTCCCACCAGTGGCGCTGGTAGTTG 2552 Query 2576 AAAGACTGGTCGAA--GAAAATTTCTTCCAGCTTTGCGACAGCCTCATCGCTGAAAAAGT 2633 || ||| ||| |||||| ||||||||||| | | |||||| |||| | | Sbjct 2551 AA--CATGGAGGAATGGAAAATCTCTTCCAGCTTCTCAATCTGTTCATCGGTGAAGACAT 2494 Query 2634 TCTTTTTCGGCCTCTTACGCTCCCCCTTGTTACGGTTGGCAACGTTGGGGTTAAGGTCGG 2693 |||||| ||| ||| || ||||| |||||||| ||||| ||||| | ||||| Sbjct 2493 TCTTTTCCGGTTGACGGCGCGGGCCTTTGTTGCGGTTGGCGACGTTAGGGTTTAAGTCGG 2434 Query 2694 CCTCGTTGCCGGTCTGGCTGTAGCGGTTGACGCGCGCCAGTCGCTCAATCTGCCGCCCGA 2753 | ||||||||| | | | | | || ||||| | ||||| ||| ||| | | Sbjct 2433 CTTCGTTGCCGCCATTGTTAAACTTGCCGATCCGCGCGTGGCGCTCCGACTGGCGCGCCA 2374 Query 2754 GCAGGTCAATCTCTTTGAAGTC 2775 |||||||||| |||||||| || Sbjct 2373 GCAGGTCAATTTCTTTGAAATC 2352 Score = 284 bits (314), Expect = 2e-72 Identities = 545/797 (68%), Gaps = 20/797 (3%) Strand=Plus/Minus Query 4409 TACGAGTGCGACCAGATTAACTTTGACTTCCACCTGAACTATAAAACCCTCGACCTGTGG 4468 ||| | ||||| |||| |||||||| |||| ||| | || ||||||||| Sbjct 828 TACAAATGCGAACAGACCAACTTTGATACGGTGCTGACCTACGCGAAGCTGGACCTGTGG 769 Query 4469 GCGCGTTTTCAGGACTTCCAGCGCCGCATCCGCGACGCCATTGTCAAGCGTCAGGCGCTC 4528 ||||||| |||||| ||||||| || ||||| ||||||| || || ||||||||||| Sbjct 768 GCGCGTTATCAGGATTTCCAGCTGCGTATCCGTAACGCCATCGTGAAACGTCAGGCGCTG 709 Query 4529 GATTTCATCATGGCCGGTTTTAACGGTACCACCCGCGCCGCCACCTCTGACCGCACCAAA 4588 || ||||||| ||| |||||||| | || || |||||| |||| | | || Sbjct 708 GACCGCATCATGATCGGCTTTAACGGCGTGAAGCGTGCGAAAACCTCTAACCGTAGCGAA 649 Query 4589 AATCCGATGCTGCAGGATGTGGCCGTCGGCTGGCTGCAGAAATACCGCAATGAAGCCCCG 4648 || ||| |||||||||||||| | ||||||||||||||| ||| | || || ||| Sbjct 648 AACCCGCTGCTGCAGGATGTGAACAAAGGCTGGCTGCAGAAAATCCGTGAGGATGCACCG 589 Query 4649 ACGCGTGTGATGAGCAATATCACCGATGCTGACGGTAAGGTCGTTTCGGCAGTGATTCGC 4708 | || ||| ||| | |||| | | |||| | | ||| | | | Sbjct 588 GATCACGTCATGGGCAGCACCACCA---CGGGCGGTGAAACCACACCGGGTGCGGTGAAA 532 Query 4709 GTCGGTCGAAACG--GCGACTATGAGAACCTCGACGCGCTGGTGATGGATGCGACCAATA 4766 ||||| |||| | | || |||| ||||| ||||| ||||||||||||| |||| Sbjct 531 GTCGG--GAAAGGTGGAGAATATGCCAACCTGGACGCCGTGGTGATGGATGCCGTCAATG 474 Query 4767 ACCTGATTGACGAGGTTTATCAGGATGACCCGAAACTCGTTGCCATCGTTGGCCGTAAGC 4826 | || || |||| ||| || ||||| || | || || | || ||| ||| ||| Sbjct 473 AGCTTATCGACGTGGTCTACCAGGACGATGACGATCTGGTGGTGATTTGTGGTCGTGAGC 414 Query 4827 TGCTGGCCGACAAATATTTCCCGCTGGTGAACAAGCCGCAGGAAAACAGCGAGGCGCTCG 4886 ||||| | ||||| |||||||||||||| ||||| ||||||||||| || || | Sbjct 413 TGCTGTCTGACAAGTATTTCCCGCTGGTCAACAAAGACCAGGAAAACAGTGAAAAACTGG 354 Query 4887 CGGCAGATATCATCATCAGCCAGAAGCGAATCGGCAACCTGCCTGCTGTGCGTGTGCCGT 4946 | || ||||| |||||||| ||||| || || || ||||| || ||||||| ||||| Sbjct 353 CTGCCGATATGATCATCAGTCAGAAACGCATGGGTGGCCTGCAGGCCGTGCGTGCGCCGT 294 Query 4947 ACTTCCCGGCGAATGCCGTGTTAGTGACCACGCTGGAAAACCTCTCTATCTATTTCATGG 5006 ||||||| ||||||| || | | ||| ||||| ||||| || || || | || Sbjct 293 TCTTCCCGCCGAATGCGCTGCTGATCACCCGTCTGGATAACCTGTCCATTTACTGGCAGG 234 Query 5007 ATGAGAGCCACCGCCGCAGCATTGATGAAAACCCGAAAAAAGACCGCGTGGAAAACTACG 5066 | || | || |||||| || || ||||||||| ||||| | ||||||| | Sbjct 233 AGGACACCCGCCGCCGTTCGGTTATCGACAACCCGAAACGTGACCGGATTGAAAACTTTG 174 Query 5067 AGTCGATGAATATCGACTATGTGGTCGAGGCGTATGCCGCCG-GGTGC-CTGCTGGAAAA 5124 | || | || | ||||||||| |||| || |||| | | || ||| ||||||| Sbjct 173 AATCCGTTAACGAAGCCTATGTGGTTGAGGACTA--CCGCTGCGCAGCACTGGTGGAAAA 116 Query 5125 CATCACCCTGGGCGATTTCACCGCACCTGCAGCACCGGAAAGCGGAGCCTAAACCATGA- 5183 |||| | || || |||| ||| | ||| ||| |||||| ||| |||||| Sbjct 115 CATCCAGATTGGTGACTTCAGCGCCGCCGCA------GAAGCCGGAGCGTAACCCATGAG 62 Query 5184 --CGAGCCCCGCACAGC 5198 ||| ||||||| || Sbjct 61 CCTGAGTCCCGCACGGC 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95023337623330