Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4 100 2e-16 seq1 86.0 4e-12 >seq4 Length=2360143 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| || | || || ||||| |||||||| || || || | | Sbjct 1035697 ATGCAGATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1035756 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || ||| ||| ||||| || || | || ||||| ||| Sbjct 1035757 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1035816 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || || ||||| |||||||| || || | | | ||| | |||||||||| Sbjct 1035817 CAAAGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTACAAC 1035876 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||||||||| || | || || ||| Sbjct 1035877 ATCCAAAAAGAGTCAACCCTTCACTTGGTT 1035906 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || ||||| |||||||| || || || | | Sbjct 1036381 ATGCAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036440 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || |||| | || || || ||||| | || ||||| || Sbjct 1036441 GATACAATTGACAATGTCAAGTCAAAGA-TTCAAGATAAGGAAGGAATCCCACCAGACCA 1036499 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || ||||| |||||||| || || | | | ||| | |||||||| Sbjct 1036500 ACAAAGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAA 1036559 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||||||||| || | || |||||| Sbjct 1036560 CATCCAAAAAGAGTCAACCCTTCACTTAGTT 1036590 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || || ||||| |||||||| || || || | | Sbjct 1036609 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 1036668 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || ||| ||| ||||| || || | || ||||| ||| Sbjct 1036669 GATACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAA 1036728 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | ||||| || || || |||||||| || || | | | ||| | ||||||||| Sbjct 1036729 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAAC 1036788 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||||||||| || | || || ||| Sbjct 1036789 ATCCAAAAAGAGTCAACCCTTCACTTGGTT 1036818 >seq1 Length=5851329 Score = 86.0 bits (94), Expect = 4e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 ||||||| ||||||||||| || || || || || || |||||||| ||||| || | Sbjct 5400304 AAATGCAAATTTTCGTTAAGACTCTTACTGGTAAGACTATCACTCTTGAAGTCGAGCCAT 5400363 Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 | || || | |||| ||||| ||||| ||||||||||| | || ||||| | Sbjct 5400364 CAGATACCATCGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGAATCCCACCAGACC 5400423 Query 23729 AACAGCGTTTAATATTTGCCGG 23750 |||| ||| | || |||||||| Sbjct 5400424 AACAACGTCTTATTTTTGCCGG 5400445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007181858196