Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4 134 3e-26 seq1 98.7 2e-15 seq402 95.1 3e-14 seq182 86.0 1e-11 >seq4 Length=2360143 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || || || ||||| | ||| ||||||| | ||| Sbjct 1036146 ACGAAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGGAAAGAGT 1036087 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||| || || || || ||||||||||| | || ||||||||| || || || || Sbjct 1036086 TCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCC 1036027 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| |||||| ||| || || || || || || | || || || | Sbjct 1036026 TTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAG 1035967 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| |||||||| || | ||| | ||||| Sbjct 1035966 AGTGATGGTTTTGCCTGTCAAAGTCTTGACGAAGATCTGCAT 1035925 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || || |||||||||| |||||||||| | ||| Sbjct 1035918 ACGAAGACGAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCGGAAAGAGT 1035859 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||| || || || || || |||||||| | || ||||||||| || || || || Sbjct 1035858 TCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCC 1035799 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| |||||| ||| || || || || || || | || || || | Sbjct 1035798 CTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAG 1035739 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| || ||||| |||||||| || Sbjct 1035738 AGTGATGGTTTTGCCTGTCAAAGTCTT 1035712 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || |||||||||| |||||||| | | |||||| ||||| Sbjct 1036820 AGAACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCC 1036761 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||||||||| | || ||||||||| || || || || ||||||||| Sbjct 1036760 TCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCT 1036701 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| ||| || || || || || || | || || || | ||||| || Sbjct 1036700 TGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTT 1036641 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| |||||||| || Sbjct 1036640 TTGCCTGTCAAAGTCTT 1036624 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || ||||| | ||| ||||| | | |||||| ||||| Sbjct 1035680 AGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCC 1035621 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||||||||| | || ||||||||| || || || || ||||||||| Sbjct 1035620 TCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCT 1035561 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| ||| || || || || || || | || || || | ||||| || Sbjct 1035560 TGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTT 1035501 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || | |||||| Sbjct 1035500 TTGCCTGTCAAAGTCTTAACAAAAATTTGCAT 1035469 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| || || |||||||| || ||||||||||| ||||| || Sbjct 877675 GAAAATTTGTCCATCAGTAATGGAAATTACATTTGTTGGAATATAAGCAGATACATCTCC 877734 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||| ||||| | || || | || || ||||||||||| || Sbjct 877735 AGCTTGAGTTTCAATAATTGGAAGAGCAGTAAGTGATCCACCTCC 877779 >seq1 Length=5851329 Score = 98.7 bits (108), Expect = 2e-15 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || ||||| ||||||||||| || || || ||||| ||||||||||| ||| || Sbjct 5400445 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGAT-TTTAGC 5400387 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || ||| ||||||||| ||||| | || || || | ||||| ||||| || || | Sbjct 5400386 TTTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAG 5400327 Query 225693 AGTTTTTATGAACACTTGCATTT 225715 ||| || | ||| | |||||||| Sbjct 5400326 AGTCTTAACGAAAATTTGCATTT 5400304 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || ||||| ||||||||||| || ||||||||||| || || |||||||| | Sbjct 5040689 CCGGCAAAAATAAGCCGTTGTTGGTCTGGTGGAATACCTTCTTTTTCATGGATCTTAGTC 5040630 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| || | || || |||| || || || | || || || || || || ||| Sbjct 5040629 TTAACATTATCAACAGTATCGGAGGCCTCAACCTCAAGAGTTATTGTTTTTCCAGTTAAA 5040570 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||||| ||| | |||||| Sbjct 5040569 GTTTTTACGAAAATTTGCAT 5040550 >seq402 Length=1604 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 7573 ACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTC 7632 || || ||||| || | |||||||| ||| | ||||| || | |||||| || ||||| Sbjct 27 ACTGCACATGCTATTTTAATGATTTTTTTTATGGTTATACCAGCTATGATTGGTGGTTTT 86 Query 7633 GGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAAC 7692 || |||||| | ||||||||||| | || ||||||||||| |||||| | | || Sbjct 87 GGTAATTGAATGGTTCCTTTAATACTAGGAGCTCCTGATATAAGTTTTCCTCGTTTGAAT 146 Query 7693 AATATAAGTTTTTGATT 7709 ||||| || ||||| || Sbjct 147 AATATTAGGTTTTGGTT 163 >seq182 Length=5810 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 7543 GGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTT 7602 ||| || | |||||||| || |||| | || || ||||| || | |||||||| ||| Sbjct 119 GGTGATGGTCAACTTTATAATTCTATTTTGACTGCACATGCTATTTTAATGATTTTTTTT 60 Query 7603 TTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGG 7661 | ||||| || | |||||| || ||||| || |||||| | ||||||||||| ||||| Sbjct 59 ATGGTTATACCAGCTATGATTGGTGGTTTTGGTAATTGAATGGTTCCTTTAAT-ATTGG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192522231047378