Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 259 4e-64 seq3 93.3 4e-14 >seq1 Length=5851329 Score = 259 bits (286), Expect = 4e-64 Identities = 511/751 (68%), Gaps = 4/751 (1%) Strand=Plus/Minus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 ||||| ||||| || ||||| ||||| ||| || |||||||| ||||| ||||| | Sbjct 4934278 ACACCGAATTTCTGATATTCAGATACCTTCTTCTCAAAGAAATTGGTTTTACCTTCAATT 4934219 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 || | ||| ||||||||||||| || || | | || ||| | |||| ||| || || Sbjct 4934218 GAGAGATTAACCATAAAATCAAATGGGTTTTTAGTATTATAAAGCTTTTGACAATTAAGT 4934159 Query 4368 GCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATT 4427 |||| | || | || || || |||| ||||| | | ||| | | |||| ||| Sbjct 4934158 TCTACCAACAGGTGATCGGCAACGTATTCGATATAATCACACATTAAACCTGAGTTCATT 4934099 Query 4428 CCAATTA-ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486 ||||| | ||| ||||| || || | || | | | || | || ||| | ||||| || Sbjct 4934098 CCAATCATATC-AACAGGGAGAGCATCAGTAAGATATTCCTTCTCAATACTAACGGCATC 4934040 Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAA 4546 | | ||||| ||||| || |||| ||||||||| || | ||||| | ||| | Sbjct 4934039 TTTAATTATTTCTTTGATACGTTCTTCAGATGGTTTGTTCTCCAAGTAGCTGTACATAAG 4933980 Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| |||||||||| || | || || |||| | ||| | || || || ||||| Sbjct 4933979 ACATGCAAAATCACGGTGTAGCCCCTCATCTCGGGAAATTAACTCATTTGAGTGTGTTAA 4933920 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 || ||||| || || | ||| |||||||| ||||| || |||||||| || || ||||| Sbjct 4933919 CCCAGGCATCAAGCCGCGCTTCTTAAGCCAGAATATGGCAGCAAATGAACCGGAGAAGAA 4933860 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTT 4725 ||| || || || || || || || | || || || || | ||| ||| || Sbjct 4933859 TATTCCCTCAACAGCTGCGAAAGCAATTACGCGTTCTCCAAAAGTAGC-ATTTTTATCAG 4933801 Query 4726 TAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGT 4785 ||||||| ||| ||||| | |||||| ||| | | | | || | | | | ||| | Sbjct 4933800 CAATCCATCTTAGAGCCCAATCAGCTTTCTTCCTGATGAATGGGAATTCATCCAAAGCAT 4933741 Query 4786 TAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 | || | ||| | ||||| | || |||| ||||| || || || |||| Sbjct 4933740 TGAAAAGCTTATTCCTTTCATCCTGATCACGAATGTAAGTTTCAATAAGCTTTGAGTACA 4933681 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 ||||| ||| |||||||| || ||||| || || ||||| || | | || || | | Sbjct 4933680 TTTCACTATGAATATTTTCCATGGCAATTTGGAAACCGTAGAAAAAGCGTGCCTCAGGGA 4933621 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 | |||||||| || | |||||||| ||||| || ||||| || ||||| || || | Sbjct 4933620 CCTGAACTTCCTTTGAGAATCTTTCAACTAAATTCTCGTTGACAATACCATCTGATGCAG 4933561 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTA 4996 ||||||| ||||| || || |||||||| Sbjct 4933560 CAAAAAAGGCCAATACTCTTGAAATAAAGTA 4933530 >seq3 Length=2731838 Score = 93.3 bits (102), Expect = 4e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 6052 CAATTCCTATTTCTTTTACTTCTGTAAGGGATCGCCAATCTTGGTTAGCGCTTCCGATGT 6111 ||| ||||| ||||| |||| ||| | |||| ||||||||| || || || | || Sbjct 1645067 CAACTCCTAGCTCTTTAACTTGTGTCAATGATCTCCAATCTTGATTTGCAGAACCAACGT 1645008 Query 6112 AAATGTGTCTTCCGTCAACAATCCAAAATTTAGTGTGAAGAATTCCACC 6160 ||| |||| ||||||||||||||||| ||| || |||||||||||||| Sbjct 1645007 AAAAGTGTTTTCCGTCAACAATCCAAGCTTTTGTATGAAGAATTCCACC 1644959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427046544860471