Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4 163 7e-35 seq1 95.1 3e-14 >seq4 Length=2360143 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| || ||||||||||||||||||||||| | | |||||| ||||| || || | Sbjct 1036583 TGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCCTCAAGTTGT 1036524 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| | || || ||||| | | |||||||||||| |||||||| ||| Sbjct 1036523 TTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTATCTTGAATCTTT 1036464 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| | || | | || ||| |||||| |||||||| || |||||||| || Sbjct 1036463 GACTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGTC 1036404 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | |||||| ||||||| |||||| Sbjct 1036403 AAAGTCTTGACGAAGATCTGCAT 1036381 Score = 150 bits (166), Expect = 4e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||||||||||||||||||||||| | |||||| ||||| || | Sbjct 1035903 CAAG-TGAAGGGTTGACTCTTTTTGGATGTTGTAATCGGAAAGAGTTCTTCCATCCTCAA 1035845 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||||||||| | || || ||||| | | |||||| ||||| ||||||| Sbjct 1035844 GTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGAA 1035785 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||||| | || | | || ||| |||||| |||||||| || ||||||| Sbjct 1035784 TCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGC 1035725 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| || || | |||||| Sbjct 1035724 CTGTCAAAGTCTTAACAAAAATCTGCAT 1035697 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| ||||| || || ||||||| | |||||| ||||| || | Sbjct 1036131 CAAG-TGAAGGGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTCAA 1036073 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || |||||||| | || || ||||| | | |||||||||||| ||||||| Sbjct 1036072 GTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGAA 1036013 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||||| | || | | || ||| |||||| |||||||| || ||||||| Sbjct 1036012 TCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGC 1035953 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| ||||||| |||||| Sbjct 1035952 CTGTCAAAGTCTTGACGAAGATCTGCAT 1035925 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||||||||||||||||||||| | | |||||| ||||| || | Sbjct 1036815 CAAG-TGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCCTCAA 1036757 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || |||||||| | || || ||||| | | |||||| ||||| ||||||| Sbjct 1036756 GTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGGGATTCCCTCCTTGTCTTGAA 1036697 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||||| | || | | || ||| |||||| |||||||| || ||||||| Sbjct 1036696 TCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGC 1036637 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| || || | |||||| Sbjct 1036636 CTGTCAAAGTCTTGACAAAAATCTGCAT 1036609 Score = 129 bits (142), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| ||||| || || ||||||| | |||||| ||||| || | Sbjct 1036359 CAAG-TGAAGGGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCCTCAA 1036301 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||||||||| | || || ||||| | | ||||| || || ||||||| Sbjct 1036300 GTTGTTTTCCGGCGAAGATTAATCTTTGTTGGTCTGGTGGAATTCCCTCTTTGTCTTGAA 1036241 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||||| | || | | || ||| |||||| |||||||| || ||||||| Sbjct 1036240 TCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGC 1036181 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| || |||| |||||| Sbjct 1036180 CTGTCAAAGTCTTGACAAAGATCTGCAT 1036153 >seq1 Length=5851329 Score = 95.1 bits (104), Expect = 3e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||| || ||||| | || ||||| | | ||||||||| || ||||| ||||| | Sbjct 5400445 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTAGCT 5400386 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || ||| | || | | | ||||| ||| ||||||||||| ||||| || || || ||| Sbjct 5400385 TTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAGA 5400326 Query 152085 GTCTTCACGAAGACCTGCATTT 152106 ||||| ||||| | ||||||| Sbjct 5400325 GTCTTAACGAAAATTTGCATTT 5400304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153812122185877