Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq4 178 3e-39 seq1 125 1e-23 >seq4 Length=2360143 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| |||| || | || ||||||||||||||||| || | Sbjct 1035924 ACCTCCACGAAGACGAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCGGA 1035865 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | |||||||| |||||||| ||||| |||||||| | ||||||||| || Sbjct 1035864 AAGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGG 1035805 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||| ||||||| || ||| | || || || || |||| || || Sbjct 1035804 GATTCCCTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTAC 1035745 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| || || || |||||||||||||| || |||||||| Sbjct 1035744 CTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATCTGCAT 1035697 Score = 172 bits (190), Expect = 1e-37 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 282867 CGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAG 282926 || ||||| ||||| || ||||| |||| || | || ||||||||||||||||| Sbjct 1036841 CGAGAACCTCCACGGAGACGAAGAACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAA 1036782 Query 282927 TCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 |||| ||| || | |||||||| |||||||| || || ||||| || | ||||||||| Sbjct 1036781 TCAGAAAGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCT 1036722 Query 282987 CCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT 283046 || || |||||||||||||| ||||||| || ||| | || || || || |||| Sbjct 1036721 GGTGGGATTCCCTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGC 1036662 Query 283047 TCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || |||||||| || || || ||||||||||| || || |||||||| Sbjct 1036661 TCTACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 1036609 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| || | || | || ||||||||||||||||| |||| Sbjct 1036608 ACCTCCACGGAGACGAAGAACTAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGA 1036549 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | |||||||| |||||||| ||||| |||||||| | ||||||||| || Sbjct 1036548 AAGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGG 1036489 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| ||||| ||||||| || || | || || || || |||| || || Sbjct 1036488 GATTCCTTCCTTATCTTGAATCTTTGACTTGACATTGTCAATTGTATCAGAAGGCTCTAC 1036429 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| || || || ||||||||||| ||||| |||||||| Sbjct 1036428 CTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACGAAGATCTGCAT 1036381 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| |||| || | || || ||||| || || || |||| Sbjct 1035696 ACCTCCACGGAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCAGA 1035637 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | |||||||| |||||||| || || ||||| || | ||||||||| || Sbjct 1035636 AAGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGG 1035577 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||| ||||||| || ||| | || || || || |||| || || Sbjct 1035576 GATTCCCTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTAC 1035517 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| || || || |||||||||||||| || || ||||| Sbjct 1035516 CTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCAT 1035469 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| |||| || | || || ||||| || || || || | Sbjct 1036380 ACCTCCACGAAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGGA 1036321 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | |||||||| |||||||| ||||| ||||| || | ||||||||| || Sbjct 1036320 AAGAGTTCTTCCATCCTCAAGTTGTTTTCCGGCGAAGATTAATCTTTGTTGGTCTGGTGG 1036261 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||| |||||||| ||||||| || ||| | || || || || |||| || || Sbjct 1036260 AATTCCCTCTTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTAC 1036201 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| || || || ||||||||||| || || |||||||| Sbjct 1036200 CTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 1036153 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| |||| || | || || ||||| || || || || | Sbjct 1036152 ACCTCCACGAAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGAATATTATAATCGGA 1036093 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | |||||||| |||||||| || || ||||| || | ||||||||| || Sbjct 1036092 AAGAGTTCTTCCATCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGGTCTGGTGG 1036033 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||| ||||||| || ||| | || || || || |||| || || Sbjct 1036032 GATTCCTTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATTGTATCAGAAGGCTCTAC 1035973 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| || || || ||||||||||| ||||| |||||||| Sbjct 1035972 CTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTGACGAAGATCTGCAT 1035925 >seq1 Length=5851329 Score = 125 bits (138), Expect = 1e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||| || | |||||||||||| || || || || ||||||||||| || ||| Sbjct 5400445 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTAGCT 5400386 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | ||||| || || || | |||||||| |||||||| |||||||| || | | Sbjct 5400385 TTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAGA 5400326 Query 283080 GTCTTAACGAATATCTGCATTT 283101 ||||||||||| || ||||||| Sbjct 5400325 GTCTTAACGAAAATTTGCATTT 5400304 Score = 120 bits (132), Expect = 6e-22 Identities = 273/406 (67%), Gaps = 5/406 (1%) Strand=Plus/Minus Query 43984 CAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACT 44043 ||||| || || || || | || ||||| ||||| || || ||||||| ||| | || Sbjct 4802383 CAAGCTTCTACCTCAGAACTTTATGGAAAAGTTCAAGAAATCCCTCAAAAAGAGACAACA 4802324 Query 44044 CCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAA 44103 || || ||||| || |||||||||| || || || | || || |||||||| ||| Sbjct 4802323 CCATTCTATCCACGAAGTCCATATGCAGTAGCAAAATTGTACGCTTATTGGATAATAAAA 4802264 Query 44104 AATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAGT 44163 |||||||| || | ||||| || || | ||| ||| |||| |||||||| ||| Sbjct 4802263 AATTATCGTGAAGCATATGGAATATTTGCTTGCAATGGTATTTTATTCAATCATGAATCA 4802204 Query 44164 CCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAATATTTTC 44223 || | |||||| || | || || || | ||||| || | || || || || || Sbjct 4802203 CCAAGAAGAGGTAATAATTTTGTAACAAGAAAAATTACAAGGGCTGTAGCTAAAATCAGT 4802144 Query 44224 AACGGGACAGAAAAATGCATGTAT--CTAGGAAACATAGACTCTAAAAGAGATTGGGGAT 44281 | || || || ||| ||| || || || | || | ||| | |||||||| Sbjct 4802143 ATAGGTGTTCAAGAA-ACAT-TATTACTTGGTAATTTGGATGCCAAACGTGATTGGGGTC 4802086 Query 44282 ATGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCAACAAGACAGGTCAGACGACT 44341 |||| ||| ||||| ||||| |||||| || | ||||| || |||| |||| Sbjct 4802085 ATGCGAAGGAGTATGTTGAAGCTATGTGGAGAATCCTTCAACATGATGAACCAGATGACT 4802026 Query 44342 ACGTTATTGCAACTGGAAAGACGACGAGTGTCCGTGACTT-TGTAA 44386 |||||||| || || || || |||||| | || || ||||| Sbjct 4802025 TTGTTATTGCTACAGGTAAAACTCAAAGTGTCAGAGATTTCTGTAA 4801980 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||| || | ||||||||||| |||||||| || || || |||||||| | Sbjct 5040689 CCGGCAAAAATAAGCCGTTGTTGGTCTGGTGGAATACCTTCTTTTTCATGGATCTTAGTC 5040630 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || |||| | ||| || || || || || || ||||| || || || || || ||| Sbjct 5040629 TTAACATTATCAACAGTATCGGAGGCCTCAACCTCAAGAGTTATTGTTTTTCCAGTTAAA 5040570 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || ||||| || ||||| Sbjct 5040569 GTTTTTACGAAAATTTGCAT 5040550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046731327539898