Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1 264 1e-65 seq10 91.5 2e-13 >seq1 Length=5851329 Score = 264 bits (292), Expect = 1e-65 Identities = 556/819 (68%), Gaps = 24/819 (3%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCT 23263 ||| ||||| | ||| |||||||| || | |||| || || ||||| || ||||| | Sbjct 4934282 CATTACACCGAATTTCTGATATTCAGATAC-CTTCTTCTCAAAGAAATTGGTTTTACCTT 4934224 Query 23264 CTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATG 23323 | | ||| | ||| |||||||||||||||| || ||||||||| | ||||| || Sbjct 4934223 CAATTGAGAGATTAACCATAAAATCAAATGGGTTTTTAGTATTATAAA--GCTTT---TG 4934169 Query 23324 ATAATTCCTTT-----AAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATC 23378 | |||| || || || ||| || || |||| ||||| | |||||| ||| | Sbjct 4934168 ACAATTAAGTTCTACCAACAGGTGATCGGCAACGTATTCGATATAATCACACATTAAACC 4934109 Query 23379 ATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGA-ATAGTTTTTCAATGG 23437 |||| || || || | | || || | |||||| ||||| || || ||||| Sbjct 4934108 TGAGTTCATTCCAATCATATCAACAGGGAGAGCATCAG-TAAGATATTCCTTCTCAATAC 4934050 Query 23438 AAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACT 23497 ||| |||||||||||||||| ||| ||||||| ||| | | || || Sbjct 4934049 TAACGGCATCTTTAATTATTTCTTTGATACGTTCTTCAGATGGTTTGTTCTCCAAGTAGC 4933990 Query 23498 TAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAG 23557 | ||| | |||||||||||||| ||||| || ||||| | ||| || ||||| | Sbjct 4933989 TGTACATAAGACATGCAAAATCACGGTGTAGCCCCTCATCTCGGGAAATTAACTCATTTG 4933930 Query 23558 AAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATC 23617 | |||||| || ||||| || || || || |||| ||| ||||| ||||||||||| | Sbjct 4933929 AGTGTGTTAACCCAGGCATCAAGCCGCGCTTCTTAAGCCAGAATATGGCAGCAAATGAAC 4933870 Query 23618 CGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCAT 23677 |||| ||||| || ||||||||||| || || || | | ||| ||||| || |||| Sbjct 4933869 CGGAGAAGAATATTCCCTCAACAGCTGCGAAAGCAATTACGCGTTCTCCAAAAGTAGCAT 4933810 Query 23678 TATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTG--- 23734 | | ||||| ||||||| || | ||||| ||| ||| || | | | ||| | Sbjct 4933809 TTTTATCAGCAATCCATCTTAGAGCCCAATCAGCTTTC----TTCCTGA-TGAATGGGAA 4933755 Query 23735 TT--TCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAAT 23792 || || | || || || || | | |||| || | ||| || || || ||||| Sbjct 4933754 TTCATCCAAAGCATTGAAAAGCTTATTCCTTTCATCCTGATCACGAATGTAAGTTTCAAT 4933695 Query 23793 TAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACA 23852 || ||||||||| |||||||||||| || ||||| || || || || ||| | Sbjct 4933694 AAGCTTTGAGTACATTTCACTATGAATATTTTCCATGGCAATTTGGAAACCGTAGAAAAA 4933635 Query 23853 TCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAAT 23912 | || |||| | ||||| || || | ||||||| | ||||||| ||||| ||||| Sbjct 4933634 GCGTGCCTCAGGGACCTGAACTTCCTTTGAGAATCTTTCAACTAAATTCTCGTTGACAAT 4933575 Query 23913 ACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGA 23972 |||||| |||||||| || || | || | ||||| | | |||||| ||| Sbjct 4933574 ACCATCTGATGCAGCAAAAAAGGCCAATACTCTTGAAATAAAGTAACGCTCATCATCTGA 4933515 Query 23973 TAATTTTTTCCAATCATTAATATCTTTTGATAAATCAAC 24011 | | || ||| || || ||||| ||| || ||||| Sbjct 4933514 CATTGATTCCCAGTCTTTCATATCCTTTCCCAAGTCAAC 4933476 >seq10 Length=1069219 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 139427 CAGGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTG 139486 |||| || ||||||| |||||||||||||| || | |||||||| || ||||| |||| Sbjct 274179 CAGGAGTTTTACATACCAAATTTTGGATTGTCGACCAAAAACATATCTACATTGGTAGTG 274120 Query 139487 CTAACATGGACTGGCGATCACTAACTCAAGTAAAAGAA 139524 | || ||||| ||| |||||| ||| |||| |||||| Sbjct 274119 CAAATATGGATTGGAAATCACTGACTGAAGTCAAAGAA 274082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521484173581800