Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq5 109 7e-19 seq1 91.5 2e-13 >seq5 Length=1484661 Score = 109 bits (120), Expect = 7e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155873 TAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAACCG 155932 ||| ||||| | |||||| || || || |||||| ||||| || | | ||||| | Sbjct 567245 TAATATTTGTACACGCCCATTCTCGTCAGGTAATGATATTTCCATTTGTACTTCCATTCT 567304 Query 155933 CCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATTAA 155992 |||||||||||||||||||| ||||| | || ||| || |||||||| || | ||| Sbjct 567305 ACCAGGTCTTAATAATGCTTCATCAATCATATCTCTTCTATTTGTCATACCGATAACTAA 567364 Query 155993 AATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTACGGCGTC 156052 ||||||||||| || ||||| || ||||| | | | |||||| ||||| | || Sbjct 567365 AATGTTGTTTAGTTGATCAACACCATCCATTTTTGTTAGGATTTGATTAACTACTGTATC 567424 Query 156053 GTG 156055 ||| Sbjct 567425 GTG 567427 >seq1 Length=5851329 Score = 91.5 bits (100), Expect = 2e-13 Identities = 309/472 (65%), Gaps = 26/472 (6%) Strand=Plus/Plus Query 50445 GATCGTTTAGGATTTAATTACAGAAACAAAGGAGATTTAGGACCTGTTTACGGTTTTCAA 50504 ||| || ||||||||| | | ||| |||| ||||||||||||||||||||||| ||| Sbjct 5221538 GATAGTCTAGGATTTACTGAAAGACCAGAAGGTGATTTAGGACCTGTTTACGGTTTCCAA 5221597 Query 50505 TGGAGACATTTTGGAGCGCGTTACATA------AATTG----CGACGTAAATTACGAAGG 50554 |||||||||||||| || | ||| | ||| |||| || ||| ||| Sbjct 5221598 TGGAGACATTTTGGTGC----TGAATATGAGGGAGTTGATGCCGAC-TA---TAC--AGG 5221647 Query 50555 TCAAGGCGTGGATCAACT-GCAAAAAATTATAACGACGTTGAAAACAAACC-CCGACGAT 50612 |||| | |||||||| ||| | | | | | | ||||||| || | | | Sbjct 5221648 AAAAGGAATTGATCAACTAGCAGATGTTATTGATCAAATAAAAAACAACCCTTCTTCAA- 5221706 Query 50613 CGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAGATCAAACCGTTTTACCTCCG 50672 | | ||| | | | || ||||||||| | ||| | ||| ||| ||||||||||| Sbjct 5221707 -GAAGAATTATCTTATCTGCTTGGAATCCATCTGATCTTGATAAAATGGTTTTACCTCCA 5221765 Query 50673 TGTCATGTTTTATGTCAATTTTATGCCACAGACAATGTTTTATCCTGTCAATGTTATCAA 50732 |||||| | ||||||||||| ||| | ||| ||||| | |||||| Sbjct 5221766 TGTCATACACTTGTTCAATTTTATGTTCAAGATGGAGAGTTAAGTTGTCATTTGTATCAA 5221825 Query 50733 AGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTAGCTTCTTACGCTTTATTAACG 50792 | | |||| | ||||| || ||||| || ||| | ||||| ||| | | | || Sbjct 5221826 CGCAGTGGTGATGTCGGTTTGGGAGTTCCATTTAACATTGCTTCATACTCACTTATGACC 5221885 Query 50793 TATTTGATCGC-TCAAGCCGTCGATATGAAACCGGGAGAATTTATTCATACGTTAGGAGA 50851 | |||| || || || || || | | | || || ||| |||| || | || || Sbjct 5221886 CACATGATTGCAAAAATTTGTGGA-ATAACAACTGGTGATTTTGTTCACACTATTGGCGA 5221944 Query 50852 CGCTCATATTTACCTCGATCACGTCGATGCTTTAAAGGAGCAATTGACTCGA 50903 ||||||||||| | || || |||||||| | | |||||||||||| Sbjct 5221945 TGCTCATATTTATAAAAACCATGTTGATGCTTTGAGACAACAATTGACTCGA 5221996 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 63752 AAATAGGTGATAAATTTGCTTCTTTTACAGCTCAAAAAGGTACGTGTGGTATGATTTATC 63811 |||| |||||||||||||| || | ||||||||||| |||||||| || | Sbjct 2650235 AAATTGGTGATAAATTTGCCTCAAGGCATGGACAAAAAGGTACTATGGGTATGATGTACC 2650294 Query 63812 GACAAGAAGATATGCCTTTTACCAAAGACGG--TATCGTACCCGATCTCGTCATCAATCC 63869 | |||||||||||||||||||| ||||| || |||| || || || | || ||||| Sbjct 2650295 GTCAAGAAGATATGCCTTTTACAAAAGAAGGGTTATC--TCCTGACATCATTATTAATCC 2650352 Query 63870 ACACGCTTTTCCCAGTCGTATGAC 63893 || || |||| ||||||||| Sbjct 2650353 TCATGCCGTTCCATCTCGTATGAC 2650376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667070305335720