Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 174 4e-38 seq1 107 5e-18 >seq4 Length=2360143 Score = 174 bits (192), Expect = 4e-38 Identities = 164/208 (79%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||| | ||||| ||||| ||||| || ||||| || || || Sbjct 1035700 CAGATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCTGAT 1035759 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||||||| ||||| || |||||||| || ||||| ||| Sbjct 1035760 ACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAACAA 1035819 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||||||||| || || |||||||| |||||| ||||||| ||| || Sbjct 1035820 AGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTACAACATC 1035879 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 |||||||| ||||| || || |||| || Sbjct 1035880 CAAAAAGAGTCAACCCTTCA-CTTGGTT 1035906 Score = 165 bits (182), Expect = 2e-35 Identities = 162/208 (78%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | ||||| ||||| ||||| || ||||| || || || Sbjct 1035928 CAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCTGAT 1035987 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||||||| ||||| ||||||||||| || ||||| ||| Sbjct 1035988 ACAATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAACAA 1036047 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| |||||||| || || |||||||| |||||| |||||||||| | Sbjct 1036048 AGATTAATCTTCGCTGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAATATT 1036107 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| || ||||| || || |||| || Sbjct 1036108 CAAAAGGAGTCAACCCTTCA-CTTGGTT 1036134 Score = 163 bits (180), Expect = 7e-35 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | ||||| ||||| ||||| || ||||| || || || Sbjct 1036384 CAGATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCTGAT 1036443 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||||||| || || ||||||||||| || ||||| ||| Sbjct 1036444 ACAATTGACAATGTCAAGTCAAAGATTCAAGATAAGGAAGGAATCCCACCAGACCAACAA 1036503 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||||||||| || || |||||||| |||||| | ||||| ||| || Sbjct 1036504 AGATTGATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCTGATTACAACATC 1036563 Query 178104 CAAAAAGAATCAACACTGCA 178123 |||||||| ||||| || || Sbjct 1036564 CAAAAAGAGTCAACCCTTCA 1036583 Score = 159 bits (176), Expect = 8e-34 Identities = 161/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | ||||| ||||| ||||| || ||||| || || || Sbjct 1036156 CAGATCTTTGTCAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCTGAT 1036215 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||||||| |||||||| ||||| || || ||||| ||| Sbjct 1036216 ACAATTGACAACGTCAAGTCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCAACAA 1036275 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||||||||| || || |||||||| |||||| |||||||||| | Sbjct 1036276 AGATTAATCTTCGCCGGAAAACAACTTGAGGATGGAAGAACTCTTTCCGATTATAATATT 1036335 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| || ||||| || || |||| || Sbjct 1036336 CAAAAGGAGTCAACCCTTCA-CTTGGTT 1036362 >seq1 Length=5851329 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || || || ||||| || || || || ||||| Sbjct 5400309 CAAATTTTCGTTAAGACTCTTACTGGTAAGACTATCACTCTTGAAGTCGAGCCATCAGAT 5400368 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| || || || ||||||||||||||||| || ||||| ||| Sbjct 5400369 ACCATCGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGAATCCCACCAGACCAACAA 5400428 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || ||||| Sbjct 5400429 CGTCTTATTTTTGCCGG 5400445 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||| | || |||||||| || || || ||||| || ||| || Sbjct 5040553 CAAATTTTCGTAAAAACTTTAACTGGAAAAACAATAACTCTTGAGGTTGAGGCCTCCGAT 5040612 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || || || ||||| || || |||||||| || || || ||||| ||| Sbjct 5040613 ACTGTTGATAATGTTAAGACTAAGATCCATGAAAAAGAAGGTATTCCACCAGACCAACAA 5040672 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || ||||| Sbjct 5040673 CGGCTTATTTTTGCCGG 5040689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203722146812878