Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq146581 1090 0.0 >seq146581 Length=609 Score = 1090 bits (1208), Expect = 0.0 Identities = 607/609 (99%), Gaps = 0/609 (0%) Strand=Plus/Plus Query 416 GATCTCCAGCCAGGAACTATTGAGTACGAACGCCATCGACTTACGCGTGCGCAGGCCGAC 475 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GATCTCCAGCCAGGGACTATTGAGTACGAACGCCATCGACTTACGCGTGCGCAGGCCGAC 60 Query 476 GCACAGGAACTGAAGAATGCCAGAGACTCCGCTGAAGTGGTGGAAACCGCATTCTGTACT 535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCACAGGAACTGAAGAATGCCAGAGACTCCGCTGAAGTGGTGGAAACCGCATTCTGTACT 120 Query 536 TTCGTGCTGTCGCGGATCGCAGGTGAAATTGCCAGTATTCTCGACGGGCTCCCCCTGTCG 595 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 121 TTCGTGCTGTCGCGGATCGCAGGTGAAATTGCCAGTATTCTCGACGGGATCCCCCTGTCG 180 Query 596 GTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATC 655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATC 240 Query 656 ATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAA 715 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAA 300 Query 716 TATATCGAACAGTCAGGTTAACAGGCTGCGGCATTTTGTCCGCGCCGGGCTTCGCTCACT 775 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TATATCGAACAGTCAGGTTAACAGGCTGCGGCATTTTGTCCGCGCCGGGCTTCGCTCACT 360 Query 776 GTTCAGGCCGGAGCCACAGACCGCCGTTGAATGGGCGGATGCTAATTACTATCTCCCGAA 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GTTCAGGCCGGAGCCACAGACCGCCGTTGAATGGGCGGATGCTAATTACTATCTCCCGAA 420 Query 836 AGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAA 895 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAA 480 Query 896 TGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTA 955 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTA 540 Query 956 TTCCAAAATGCTGCTGGGTGTTTATGCCTACTTTATAGAGCATAAGCAGCGCAACACCCT 1015 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TTCCAAAATGCTGCTGGGTGTTTATGCCTACTTTATAGAGCATAAGCAGCGCAACACCCT 600 Query 1016 TATCTGGTT 1024 ||||||||| Sbjct 601 TATCTGGTT 609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154776676550080