Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq146581 322 1e-83 >seq146581 Length=609 Score = 322 bits (356), Expect = 1e-83 Identities = 372/501 (74%), Gaps = 0/501 (0%) Strand=Plus/Plus Query 365 GAGGTCGTAGAGACTGCGTTTTGTACCTTCGTGTTATCCAGAATTGCCGCTGAAATATCC 424 || || || || || || || ||||| |||||| | || | || || | |||||| || Sbjct 94 GAAGTGGTGGAAACCGCATTCTGTACTTTCGTGCTGTCGCGGATCGCAGGTGAAATTGCC 153 Query 425 AGTATCCTGGATGGCATACCCCTTTCGATGCAGCGCCGGTTCCCTGAACTGGAAAATCGG 484 ||||| || || || || ||||| ||| ||||||| || || || ||||||||||| || Sbjct 154 AGTATTCTCGACGGGATCCCCCTGTCGGTGCAGCGGCGTTTTCCGGAACTGGAAAACCGA 213 Query 485 CATATCGAGTTCCTGAAAGGGGACGTAATAAAGGCGATGAATAAGGCTGCGGCGCTGGAT 544 ||| | || ||||||||| |||| | || || || ||||| || || || ||||||||| Sbjct 214 CATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGAT 273 Query 545 GAACGGATTCCGGGGTTGTTGAATGATTATATCGACCAGTCAGGTAGCTAATCTGCGAAC 604 |||| ||| ||||||||| ||| ||| |||||||| ||||||||| | ||||| Sbjct 274 GAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCGGCA 333 Query 605 AGCGGTAAAAGCTGGTCTGAAATCACTATACCGCCCGGAACCCATGACAGCTGTCGAATG 664 || || || || ||||| | | | ||||| || ||| || || ||||| Sbjct 334 TTTTGTCCGCGCCGGGCTTCGCTCACTGTTCAGGCCGGAGCCACAGACCGCCGTTGAATG 393 Query 665 GGCCGATGCGCATTATTACCTTCCGAAAGAATCCGCTTATCAGGAGGGTCGCTGGGAAAC 724 ||| ||||| |||| || || |||||||||||||| || ||||| || ||||||||||| Sbjct 394 GGCGGATGCTAATTACTATCTCCCGAAAGAATCCGCATACCAGGAAGGGCGCTGGGAAAC 453 Query 725 ACTGCCATTTCAGCGCGCGATCATGAATGCGATGGGCAGTGACTATATTCGCATTGTTAA 784 |||||| |||||||| || |||||||||||||||||||| ||||| || || || || Sbjct 454 ACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAA 513 Query 785 CGTCATTAAGTCGGCGCGAGTAGGCTATTCGAAAATGCTCCTCGGCGTCATTGCTTATTT 844 || | ||||| || || || || ||||| |||||||| || || || ||| || || Sbjct 514 TGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTGGGTGTTTATGCCTACTT 573 Query 845 CATCGAGCACAAACAGCGTAA 865 || ||||| || ||||| || Sbjct 574 TATAGAGCATAAGCAGCGCAA 594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147983799548140