Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_001901.1
Length=46375
Score E
Sequences producing significant alignments: (Bits) Value
seq146581 322 1e-83
>seq146581
Length=609
Score = 322 bits (356), Expect = 1e-83
Identities = 372/501 (74%), Gaps = 0/501 (0%)
Strand=Plus/Plus
Query 365 GAGGTCGTAGAGACTGCGTTTTGTACCTTCGTGTTATCCAGAATTGCCGCTGAAATATCC 424
|| || || || || || || ||||| |||||| | || | || || | |||||| ||
Sbjct 94 GAAGTGGTGGAAACCGCATTCTGTACTTTCGTGCTGTCGCGGATCGCAGGTGAAATTGCC 153
Query 425 AGTATCCTGGATGGCATACCCCTTTCGATGCAGCGCCGGTTCCCTGAACTGGAAAATCGG 484
||||| || || || || ||||| ||| ||||||| || || || ||||||||||| ||
Sbjct 154 AGTATTCTCGACGGGATCCCCCTGTCGGTGCAGCGGCGTTTTCCGGAACTGGAAAACCGA 213
Query 485 CATATCGAGTTCCTGAAAGGGGACGTAATAAAGGCGATGAATAAGGCTGCGGCGCTGGAT 544
||| | || ||||||||| |||| | || || || ||||| || || || |||||||||
Sbjct 214 CATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGAT 273
Query 545 GAACGGATTCCGGGGTTGTTGAATGATTATATCGACCAGTCAGGTAGCTAATCTGCGAAC 604
|||| ||| ||||||||| ||| ||| |||||||| ||||||||| | |||||
Sbjct 274 GAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCGGCA 333
Query 605 AGCGGTAAAAGCTGGTCTGAAATCACTATACCGCCCGGAACCCATGACAGCTGTCGAATG 664
|| || || || ||||| | | | ||||| || ||| || || |||||
Sbjct 334 TTTTGTCCGCGCCGGGCTTCGCTCACTGTTCAGGCCGGAGCCACAGACCGCCGTTGAATG 393
Query 665 GGCCGATGCGCATTATTACCTTCCGAAAGAATCCGCTTATCAGGAGGGTCGCTGGGAAAC 724
||| ||||| |||| || || |||||||||||||| || ||||| || |||||||||||
Sbjct 394 GGCGGATGCTAATTACTATCTCCCGAAAGAATCCGCATACCAGGAAGGGCGCTGGGAAAC 453
Query 725 ACTGCCATTTCAGCGCGCGATCATGAATGCGATGGGCAGTGACTATATTCGCATTGTTAA 784
|||||| |||||||| || |||||||||||||||||||| ||||| || || || ||
Sbjct 454 ACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAA 513
Query 785 CGTCATTAAGTCGGCGCGAGTAGGCTATTCGAAAATGCTCCTCGGCGTCATTGCTTATTT 844
|| | ||||| || || || || ||||| |||||||| || || || ||| || ||
Sbjct 514 TGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTGGGTGTTTATGCCTACTT 573
Query 845 CATCGAGCACAAACAGCGTAA 865
|| ||||| || ||||| ||
Sbjct 574 TATAGAGCATAAGCAGCGCAA 594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147983799548140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |