Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq48601 109 6e-19 seq51722 93.3 4e-14 >seq48601 Length=1711 Score = 109 bits (120), Expect = 6e-19 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| || || ||||| ||||||||| | || ||||||||| | Sbjct 101 AATGCAAATTTTCGTCAAAACACTGACTGGCAAGACCATCACCCTGGAGGTCGAAGCCTC 160 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | ||||| | |||| ||||| | ||||| || |||||||| | |||| Sbjct 161 AGACACCATCGAAAACG-TAAAGGCCAAAATCCAGGACAAGGAAGGCATCCCGCCAGACC 219 Query 40808 AGCAACGACTCATCTACGCGGG 40829 ||||||| || |||| ||| || Sbjct 220 AGCAACGCCTTATCTTCGCCGG 241 >seq51722 Length=1631 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||||||||| || || ||||| |||||||| || ||| | || |||||||| | Sbjct 1286 AATGCAAATATTCGTCAAGACTCTCACTGGCAAAACAATTACCCTTGAAGTCGAAGCATC 1227 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||| | |||| |||||||| || || ||||| ||||| | ||||| Sbjct 1226 GGATACTATTGAAAATGTTAAGGCAAAAATTCAAGATAAGGAGGGAATCCCTCCAGACCA 1167 Query 40809 GCAACGACTCATCTACGCGGGCAA 40832 ||| ||||| || | ||| || || Sbjct 1166 GCAGCGACTTATTTTCGCTGGTAA 1143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514141683445600