Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq48601 109 6e-19
seq51722 93.3 4e-14
>seq48601
Length=1711
Score = 109 bits (120), Expect = 6e-19
Identities = 111/142 (78%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
||||||||| ||||| ||||| || || ||||| ||||||||| | || ||||||||| |
Sbjct 101 AATGCAAATTTTCGTCAAAACACTGACTGGCAAGACCATCACCCTGGAGGTCGAAGCCTC 160
Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|||| | | | ||||| | |||| ||||| | ||||| || |||||||| | ||||
Sbjct 161 AGACACCATCGAAAACG-TAAAGGCCAAAATCCAGGACAAGGAAGGCATCCCGCCAGACC 219
Query 40808 AGCAACGACTCATCTACGCGGG 40829
||||||| || |||| ||| ||
Sbjct 220 AGCAACGCCTTATCTTCGCCGG 241
>seq51722
Length=1631
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
||||||||||||||| || || ||||| |||||||| || ||| | || |||||||| |
Sbjct 1286 AATGCAAATATTCGTCAAGACTCTCACTGGCAAAACAATTACCCTTGAAGTCGAAGCATC 1227
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | ||| | |||| |||||||| || || ||||| ||||| | |||||
Sbjct 1226 GGATACTATTGAAAATGTTAAGGCAAAAATTCAAGATAAGGAGGGAATCCCTCCAGACCA 1167
Query 40809 GCAACGACTCATCTACGCGGGCAA 40832
||| ||||| || | ||| || ||
Sbjct 1166 GCAGCGACTTATTTTCGCTGGTAA 1143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 514141683445600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |