Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq54088 91.5 2e-13 seq51722 91.5 2e-13 >seq54088 Length=1574 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| | || || || || ||||| | || | || || Sbjct 397 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 338 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || || ||||||||||| || || || || |||||||| Sbjct 337 GGACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCA 278 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || ||||| ||||| ||| | ||||| |||| ||||| || ||||| Sbjct 277 GCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATAA 218 Query 124718 TATTCAAAAAGAATCAAC 124735 ||| ||||| || ||||| Sbjct 217 TATCCAAAAGGAGTCAAC 200 >seq51722 Length=1631 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| | || || || || ||||| | || | || || Sbjct 395 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTC 336 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || || ||||||||||| || || || || |||||||| Sbjct 335 GGACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCA 276 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || ||||| ||||| ||| | ||||| |||| ||||| || ||||| Sbjct 275 GCAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATAA 216 Query 124718 TATTCAAAAAGAATCAAC 124735 ||| ||||| || ||||| Sbjct 215 TATCCAAAAGGAGTCAAC 198 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || || ||||| || ||| | || |||| ||| Sbjct 987 AATGCAGATCTTTGTGAAGACTCTTACTGGAAAAACAATCACTCTCGAAGTTGAGGCATC 928 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| |||||| || | ||| || || || ||||||||||| || || || ||||| Sbjct 927 TGACACAATTGAGAACGTCAAAGCCAAGATCCAGGATAAAGAAGGGATTCCTCCAGATCA 868 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 |||||| | ||||||||||| Sbjct 867 ACAAAGATTGATTTTTGCAGG 847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 753876058208000